PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G186500.2 | ||||||||
Common Name | B456_012G186500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 224aa MW: 25000.1 Da PI: 6.3923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.5e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ +Rt++++k++w+++l Gorai.012G186500.2 3 RWSAIATHLP-KRTDNEIKNYWNTHL 27 4*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.951 | 1 | 31 | IPR017930 | Myb domain |
CDD | cd00167 | 2.16E-7 | 3 | 27 | No hit | No description |
SuperFamily | SSF46689 | 6.01E-8 | 3 | 36 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-13 | 3 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 3 | 27 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MYRWSAIATH LPKRTDNEIK NYWNTHLKKR LTKMGIDPVT HKPKTNALGS TTGNPKDAAN 60 LSHMAQWESA RLEAEARLVR ESKLVPSNPP QSNHFTAVAP SPTPATRPQC LDVLKAWQGV 120 VCGLFTLNMD NNNLQSPTST LNFMENTTTL PMSSSSVNGM FNENFGWNSS FNPCESGDIL 180 KVEYGSDQIP ELKERLDHPM ELHEMDCSSE GTWFQELFGF NGL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336283 | 0.0 | AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458871.1 | 1e-164 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9LE63 | 1e-43 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A0D2S540 | 1e-166 | A0A0D2S540_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G186500.1 | 1e-163 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-45 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G186500.2 |
Publications ? help Back to Top | |||
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