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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.012G186000.1 |
| Common Name | B456_012G186000, LOC105780688 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
WRKY |
| Protein Properties |
Length: 486aa MW: 53066.7 Da PI: 8.9049 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.012G186000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 108.9 | 2.4e-34 | 205 | 261 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+DgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers d++v+ei+Y+g+Hnh+
Gorai.012G186000.1 205 SDGYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 261
7****************************************.***************8 PP
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| 2 | WRKY | 107.6 | 6.2e-34 | 370 | 428 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
Gorai.012G186000.1 370 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 428
59********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:1900150 | Biological Process | regulation of defense response to fungus |
| GO:1900425 | Biological Process | negative regulation of defense response to bacterium |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 486 aa
Download sequence Send
to blast |
MADEMQEQKP PSKTVASSKR PMITPPPRPF SEALFNGGAG LMGFSPGPMT LVSNFFSDTT 60
DDSKSFSQLL AGAMASPAAQ KLTEEQAEGG GVNTGLRFKQ NKPAGLAITQ QPSSFVMPQG 120
LLSPASLLES PGFSVFSPGP QGPFGMTHQQ ALAQVTAQVA QANSHMQIHA DTATSLQDSS 180
VMIKQPSDVS QPDQRSQPAS DKHASDGYNW RKYGQKQVKG SEFPRSYYKC THPGCPVKKK 240
VERSLDGQVT EIIYKGQHNH QPPQQNKRAK GNGTSNNRGN SESTSQLHST NLNIIKEGTC 300
SSMSKKDQES SQATTDLLSG TSDSDDEKDE DEPDTKRRSM EIRVSEPCSS HRTVTEPRII 360
VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG CNVRKHVERA STDPKAVITT 420
YEGKHNHDVP AARTSSHNTA SSNATQVRTQ NIVTDNNHGV NNSVDSTKDR QRPVARLRLK 480
EEQET*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF669767 | 0.0 | KF669767.1 Gossypium hirsutum WRKY transcription factor 40 (WRKY40) mRNA, complete cds. |
