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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.012G183200.1 |
| Common Name | B456_012G183200, LOC105779801 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 254aa MW: 28189.2 Da PI: 10.4234 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.012G183200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 289.9 | 1.1e-88 | 1 | 253 | 32 | 301 |
GAGA_bind 32 iaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksid 109
+ erdak r++nl + +++ a++++d m++ rd+++a+ ++k++++ ++++ +++ v ++t+ +
Gorai.012G183200.1 1 MVERDAKSfipsRDSNL-MVTTNTAFHQQDpvvseahtpMNY-VRDSWIAD--------REKIFSMFPATT-------PNYAVHPETSAAY 74
56999999999999999.999*********9***********.9*******........789999999665.......5788999999999 PP
GAGA_bind 110 slqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvln 199
sl l+ +++ +r+e+ + e+++ +k+ ++kkrq ++ pk +kakk+kk +k++ ++ +r+k+ kksi + +n
Gorai.012G183200.1 75 SLPI-----LRSPPYSsTRDERVA--SSV-EEPPANKDGVEPKKRQGGAAPKMPKAKKPKK----PKENANSTV--QRVKSAKKSIVFKIN 151
8888.....888888834444433..333.46777777788888999***********999....333344444..789************ PP
GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
g ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++snp+DL++hWA
Gorai.012G183200.1 152 GYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHWA 242
******************************************************************************************* PP
GAGA_bind 291 kHGtnkfvtir 301
+HGtnkfvtir
Gorai.012G183200.1 243 RHGTNKFVTIR 253
**********8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MVERDAKSFI PSRDSNLMVT TNTAFHQQDP VVSEAHTPMN YVRDSWIADR EKIFSMFPAT 60
TPNYAVHPET SAAYSLPILR SPPYSSTRDE RVASSVEEPP ANKDGVEPKK RQGGAAPKMP 120
KAKKPKKPKE NANSTVQRVK SAKKSIVFKI NGYDMDISGI PIPVCSCTGT AQQCYRWGFG 180
GWQSACCTTN VSMYPLPMST KRRGARIAGR KMSQGAFKKV LEKLAAENYN FSNPIDLRSH 240
WARHGTNKFV TIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
