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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.012G183100.1 |
| Common Name | B456_012G183100, LOC105780203 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31633.3 Da PI: 10.1969 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.012G183100.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 335.1 | 1.8e-102 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverd 78
mddd+ + rn+gyyep+ +k +lglqlmss+ erdak r+ nl +++++ ++++rd m++ rd+++a+ +
Gorai.012G183100.1 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMVERDAKSfipgRDPNL-MITTNTTFHQRDpvvseahipMNY-VRDSWIAD--------R 79
9***9999*******99..*******************99********.************************.9*******........7 PP
GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
+kl+++ ++++ +++ vl++t+ ++sl l++++ +r+e+ a + e+ + +k++ ++kkrq +++pk +kakk+k
Gorai.012G183100.1 80 EKLFNMFPATT-------PNYAVLPETSAAHSLPI-----LQPPPDSsTRDER--VASSV-EELPANKDSVEPKKRQGGAVPKMPKAKKPK 155
899***99665.......57899********9988.....7777777344443..33344.4567777778888899*************9 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
k +k++ +++ +r+k kksi + +ng ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
Gorai.012G183100.1 156 K----PKENANSAV--QRVKPAKKSIIFKINGYEMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 240
9....333444444..689************************************************************************ PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLa e y++snp+DL++hWA+HGtnkfvtir
Gorai.012G183100.1 241 MSQGAFKKVLEKLAVENYNFSNPIDLRSHWARHGTNKFVTIR 282
*****************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM VERDAKSFIP GRDPNLMITT NTTFHQRDPV 60
VSEAHIPMNY VRDSWIADRE KLFNMFPATT PNYAVLPETS AAHSLPILQP PPDSSTRDER 120
VASSVEELPA NKDSVEPKKR QGGAVPKMPK AKKPKKPKEN ANSAVQRVKP AKKSIIFKIN 180
GYEMDISGIP IPVCSCTGTA QQCYRWGFGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAVENYNF SNPIDLRSHW ARHGTNKFVT IR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
