PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G171500.1

Common Name

B456_012G171500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 162aa MW: 18348.5 Da PI: 8.8275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G171500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	13	59	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR++++ f +L +llP + ++K+s e++ +A+ Y+k+Lq Gorai.012G171500.1 13 RCLVERERRKHMKCLFTKLSSLLPIQ----QTKMSVPEMVDQATAYVKELQ 59 5679*******************8....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-13	5	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.131	8	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.07E-8	10	63	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-11	10	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-6	14	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-8	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDNGNGSSMR ISRCLVERER RKHMKCLFTK LSSLLPIQQT KMSVPEMVDQ ATAYVKELQG 60 RLEQHKGTKV QLERTCEMRK RKRMIRPVLN VRDLGYNLEV NLITGLNVEF ALSDFINILQ 120 EEGADILSAT CHHAGDKAIY TILCQVQTMI SMILSVCGTL Y*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX581502	3e-54	JX581502.1 Gossypium hirsutum clone NBRI_GE14150 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457988.1	1e-106	PREDICTED: transcription factor bHLH125-like
Refseq	XP_012457989.1	1e-106	PREDICTED: transcription factor bHLH125-like
TrEMBL	A0A0D2V6E7	1e-116	A0A0D2V6E7_GOSRA; Uncharacterized protein
STRING	Gorai.012G171500.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	8e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G171500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]