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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.012G169000.1 |
Common Name | B456_012G169000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
B3 |
Protein Properties |
Length: 270aa MW: 29062.1 Da PI: 5.5891 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.012G169000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 33.4 | 8e-11 | 4 | 91 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88
k++++ d + +rl +p k + + g + ++++ + g + W +++++ +++ ++ vl+ GW++Fv +n+Lk+gD+++ + d + +
Gorai.012G169000.1 4 KKFKTTDIN--KRLAIPGKILPSLpafnG-----GHAVMIQLKYGiNIWPIYCTVrENGYKKPVLSVGWRKFVADNKLKTGDIITMYKDFEdE 89
556444444..458888888877754322.....33567677777899*****8855555669**********************99653335 PP
EE CS
B3 89 ef 90
++
Gorai.012G169000.1 90 DG 91
54 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MFSKKFKTTD INKRLAIPGK ILPSLPAFNG GHAVMIQLKY GINIWPIYCT VRENGYKKPV 60 LSVGWRKFVA DNKLKTGDII TMYKDFEDED GGSHFRVEVE KPPAASKQDR SHGTLPSSSV 120 IAFNDHEVHG TNSGNEADRI PNKALDDGAI NLEGGIPIME LPDVATDTLV DGHVIAKPSV 180 TIFGAIMTDE MKCLGITKGT DMAEPSLFSP CMAKPEREID FLGIVEGGDA IAYGSGPSDA 240 AGEACCNFIT HHRSITLDLV LSQPNPYAG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX616349 | 0.0 | JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence. |