PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 270aa MW: 29062.1 Da PI: 5.5891

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G169000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.4	8e-11	4	91	3	90
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 k++++ d + +rl +p k + + g + ++++ + g + W +++++ +++ ++ vl+ GW++Fv +n+Lk+gD+++ + d + + Gorai.012G169000.1 4 KKFKTTDIN--KRLAIPGKILPSLpafnG-----GHAVMIQLKYGiNIWPIYCTVrENGYKKPVLSVGWRKFVADNKLKTGDIITMYKDFEdE 89 556444444..458888888877754322.....33567677777899***8855555669********************99653335 PP EE CS B3 89 ef 90 ++ Gorai.012G169000.1 90 DG 91 54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-11	1	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-15	1	101	No hit	No description
SuperFamily	SSF101936	7.46E-10	2	97	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.8E-4	2	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-8	11	91	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.841	45	103	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MFSKKFKTTD INKRLAIPGK ILPSLPAFNG GHAVMIQLKY GINIWPIYCT VRENGYKKPV 60 LSVGWRKFVA DNKLKTGDII TMYKDFEDED GGSHFRVEVE KPPAASKQDR SHGTLPSSSV 120 IAFNDHEVHG TNSGNEADRI PNKALDDGAI NLEGGIPIME LPDVATDTLV DGHVIAKPSV 180 TIFGAIMTDE MKCLGITKGT DMAEPSLFSP CMAKPEREID FLGIVEGGDA IAYGSGPSDA 240 AGEACCNFIT HHRSITLDLV LSQPNPYAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616349	0.0	JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458573.1	0.0	PREDICTED: uncharacterized protein LOC105779372
TrEMBL	A0A0D2W053	0.0	A0A0D2W053_GOSRA; Uncharacterized protein
STRING	Gorai.012G169000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20789	3	6

Link Out ? help Back to Top
Phytozome	Gorai.012G169000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]