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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G161900.1 | ||||||||
Common Name | B456_012G161900, LOC105778845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 34046.2 Da PI: 7.1912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7e-13 | 123 | 170 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Gorai.012G161900.1 123 KDHIMAERKRREKLSEKFIALSALVPGL-----KKMDKATVLGDAIKYMKQLQ 170 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.183 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 123 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-19 | 124 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-14 | 125 | 174 | No hit | No description |
SuperFamily | SSF47459 | 9.81E-18 | 125 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEIPPIGELP EMGLLENPNI FNQWCIDELS VLPVPVPVSA SFGDNSQHYE ASSSRPATID 60 KPQKQLKITN CCKSGKTHIS TDIQSSFSPH TLPFSSSNYN PFGNQNFLVK GYHDTNNRIS 120 QSKDHIMAER KRREKLSEKF IALSALVPGL KKMDKATVLG DAIKYMKQLQ EKVKTLEEQA 180 RQKSIESVVF VKKYQLLGDI NAQFSSWDEI SSAPFDEPLP EIEARFCDQS VLISIHCEKR 240 KGFPEKIISA IEKFNLTVIN SNVMTFGSCA LHITIVAQMD MEFCMTIKEL VKNLHSAFIF 300 LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 124 | 182 | 8 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | ERKRRE |
2 | 129 | 134 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX620920 | 8e-90 | JX620920.1 Gossypium hirsutum clone NBRI_GE67296 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458057.1 | 0.0 | PREDICTED: transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 3e-55 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A0D2V775 | 0.0 | A0A0D2V775_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G161900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G161900.1 |
Entrez Gene | 105778845 |
Publications ? help Back to Top | |||
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