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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.012G134200.1 |
Common Name | B456_012G134200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MIKC_MADS |
Protein Properties |
Length: 237aa MW: 27535.9 Da PI: 10.0942 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.012G134200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 84 | 9.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifs+tgk+ y++
Gorai.012G134200.1 9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTTGKMCQYCT 59
79**********************************************986 PP
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2 | K-box | 69.4 | 1.1e-23 | 73 | 157 | 3 | 86 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86
k +g+ e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLe++Le+s+ k+R++Knell +q+++l++k k+
Gorai.012G134200.1 73 KVTGTCiPEHDNREHLYNELAVLRKETRRLQLSMRRYTGEDMSSIPFEELDQLEHELERSVIKVRERKNELLQQQLDNLRRKRKK 157
5555555677899*********************************************************************986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 6.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.081 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-30 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.65E-38 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 7.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-19 | 81 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.948 | 85 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST TGKMCQYCTE 60 GYRMEQIIER YQKVTGTCIP EHDNREHLYN ELAVLRKETR RLQLSMRRYT GEDMSSIPFE 120 ELDQLEHELE RSVIKVRERK NELLQQQLDN LRRKRKKTAI CTAGCRNTER RSSISREEWK 180 LSQWSISKLW INSLSLENQA VCFSLLPFLN SSNPISSSLL SPTFKILMSS IVPLQL*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |