PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G118900.1

Common Name

B456_012G118900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 177aa MW: 19795.5 Da PI: 9.7173

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G118900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	121.1	1.5e-37	39	120	4	85
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagss 85 r pt+ Er +nk+RER+RRa+a ki+aGL+++Gny+lpkraD n+ lkA c+eAGw ve+DGt yrk s+ + + +++ ss Gorai.012G118900.1 39 YRFPTEDERLKNKQRERKRRAVAHKIFAGLKEHGNYNLPKRADSNDLLKAVCEEAGWHVEADGTIYRKKSRATMAVSMVHSS 120 589****************************************************************999999444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.5E-34	40	119	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGEKKNKNT STLRGCIKKS KGPWVVHRTT KEGGRVTRYR FPTEDERLKN KQRERKRRAV 60 AHKIFAGLKE HGNYNLPKRA DSNDLLKAVC EEAGWHVEAD GTIYRKKSRA TMAVSMVHSS 120 CQFVEDIGQS RDEDYCICND DGNVAAPTLL SLGLGRSHEC HDINLMLSLS ISSSFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-13	59	106	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-13	59	106	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-13	59	106	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-13	59	106	391	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622915	4e-41	JX622915.1 Gossypium hirsutum clone NBRI_GE69860 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458273.1	1e-131	PREDICTED: beta-amylase 8-like
TrEMBL	A0A0D2TN46	1e-129	A0A0D2TN46_GOSRA; Uncharacterized protein
STRING	Gorai.012G118900.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19597	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	1e-18	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Gorai.012G118900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]