PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G118000.1
Common NameB456_012G118000, LOC105779447
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 540aa    MW: 61060.3 Da    PI: 5.2378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G118000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.25.2e-441665383374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL +  +a +++++ la+ +L  +se  +p g++++R+a+ + + ++++ +      y      ++s   s++   a+++f++++P+ +f
  Gorai.012G118000.1 166 HLLKAHGDATEKNQTDLAEVILRCVSEKGNPVGETLERIAFNLSQDIQNQNNY-----Y----LMQES---SKNFEVAFRTFYQIFPYGRF 244
                         778888899999*****************************876666665544.....2....22333...45677889************ PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         +h++aN+aIlea+ ++ e++Hi+Dfd++ G+QWp+L++a+a    +  +lR+T ++  + +s  + ++t++ L + A+++g++f+ + +  
  Gorai.012G118000.1 245 AHFAANSAILEAIPNDaEQLHIVDFDLGVGIQWPSLIEAIAGHW-QHKTLRLTSIKWGDDHSPWRFQHTRRLLCDHARSFGLNFKVEEM-- 332
                         *************99889***********************975.5589********9999************************9997.. PP

                GRAS 184 krledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe.....adhnsesF 253
                           ++dl  e +++k+     +E la n+++ l ++ +   ++++  +e+L + k+l           +  ++++ e +      d +++sF
  Gorai.012G118000.1 333 -GIHDLVNEFMAIKKqgggtKEWLAFNCMVGLPHMGK--NKSRKLVNEFLGIAKQLltscgdnarttKRGMITLGEGDaceklKDGTGSSF 420
                         .7777766667777777888**************983..33333345666666655222222111114456788777743332233556** PP

                GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGF......kpvplsekaakqa 337
                          + f   l +y a+++s+e++++++  ++r  +E  ++g++i+                ++kW+e+ e++ F      + +++s   +++a
  Gorai.012G118000.1 421 GAYFNAQLMHYQAIMESMESNMAKHLvQARLAMECLFVGPNICAQAW------------FQKWKEMNETCYFqagttlEGLKVSRGRVMEA 499
                         *********************988878**************975544............445555554444311111156889999***** PP

                GRAS 338 klllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                         k ++++ + + y+v    ++ ++l+l W++ +Lv vS+Wr
  Gorai.012G118000.1 500 KEMVKERG-NSYEVSiggDSGNELTLDWRGITLVKVSSWR 538
                         ******99.44888877788999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.726138539IPR005202Transcription factor GRAS
PfamPF035141.8E-41166538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MFIYYFIYTY AKIQSKTNFA LNITKMMQSQ DFTPSWPLVN STIDQLEPYG FNMCVHFDAS  60
SSFHTSVDSF FSNDIFPFSP YDFDDDLLRV TVPWEDISAP LAGLDSMLTD GVEESFPLSS  120
QRQDIWSPCP SIRSSEASTD TMQSPLTMPI LGEEAMEIDN QLPLFHLLKA HGDATEKNQT  180
DLAEVILRCV SEKGNPVGET LERIAFNLSQ DIQNQNNYYL MQESSKNFEV AFRTFYQIFP  240
YGRFAHFAAN SAILEAIPND AEQLHIVDFD LGVGIQWPSL IEAIAGHWQH KTLRLTSIKW  300
GDDHSPWRFQ HTRRLLCDHA RSFGLNFKVE EMGIHDLVNE FMAIKKQGGG TKEWLAFNCM  360
VGLPHMGKNK SRKLVNEFLG IAKQLLTSCG DNARTTKRGM ITLGEGDACE KLKDGTGSSF  420
GAYFNAQLMH YQAIMESMES NMAKHLVQAR LAMECLFVGP NICAQAWFQK WKEMNETCYF  480
QAGTTLEGLK VSRGRVMEAK EMVKERGNSY EVSIGGDSGN ELTLDWRGIT LVKVSSWRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1518253821375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458654.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A0D2V5H50.0A0A0D2V5H5_GOSRA; Uncharacterized protein
STRINGGorai.012G118000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.19e-22GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]