PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G112000.1
Common NameB456_012G112000, LOC105780118
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 309aa    MW: 34883.8 Da    PI: 7.5647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G112000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-082873346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +WT+eE + + +a +++ ++   +W ++a++++ g+t  +++  ++ 
  Gorai.012G112000.1 28 KWTPEENKCFENALALYDKDtpdRWIKVASMIP-GKTVGDVIKQYRE 73
                        8********************************.******9999986 PP
2Myb_DNA-binding47.25.1e-15135179347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Gorai.012G112000.1 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-42374IPR009057Homeodomain-like
PROSITE profilePS512939.572479IPR017884SANT domain
SMARTSM007179.6E-92577IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-112781IPR009057Homeodomain-like
CDDcd001678.63E-72874No hitNo description
PfamPF002491.5E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129420.447128184IPR017930Myb domain
SuperFamilySSF466891.72E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-13132179IPR009057Homeodomain-like
SMARTSM007172.1E-13132182IPR001005SANT/Myb domain
CDDcd001677.39E-11135180No hitNo description
PfamPF002492.0E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNRGLEILSP ASYLHTSNWL FQESEGTKWT PEENKCFENA LALYDKDTPD RWIKVASMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YSRDSFTLEW GNDSQGCDGF RHYYTPGKRG  120
TGSRSSDQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQVTGGKDK RRSSIHDITT VNVPDTPSSS PDHCKHSSSS DSSAVIQAQQ QAKLATTKEI  240
DFEWKQQNGA AMVFNRTSNC NAFVSPFCGI SSYGPKLEEQ NLLGETLPRS QFGSYNTLFQ  300
MQSMQQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-162691873RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459704.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-111DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2V5590.0A0A0D2V559_GOSRA; Uncharacterized protein
STRINGGorai.012G112000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-129MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]