PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G106300.1
Common NameB456_012G106300, LOC105779230
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 296aa    MW: 33184.8 Da    PI: 6.5754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G106300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-055678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ Cg+ F++   L  H+++H
  Gorai.012G106300.1 56 YSCSFCGREFTSAQALGGHMNVH 78
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-75382No hitNo description
Gene3DG3DSA:3.30.160.601.0E-45480IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.7E-65679IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.3625683IPR007087Zinc finger, C2H2
SMARTSM003550.00195678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNQARYWMWT NRKPGLSSNN LQPSTKASYD DSWEEQAFAE DTAGSLGGCI WPPRSYSCSF  60
CGREFTSAQA LGGHMNVHRR DRARLKQSPT SQDGILHHDP QNSPNHIQKP FLPVSFQYQP  120
DEVCNFVYNP NPNSNHGTPP SPPSNSKDNC PEPTLVPALS SETAQDHPMK SPKTSTKSWS  180
NYVEDRYYHF SDLWNEVEKC PSILESGCSV KADYVQTDLS VCLNLIVRRG RTPPTTSGSK  240
EEIGCKRKRT DHTPIWPFLL KPISIETHHL QAAEVSELSP SSDDDIDLEL RLGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-115178229superman protein
2l1o_A4e-115178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458458.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A0D2VXU70.0A0A0D2VXU7_GOSRA; Uncharacterized protein
STRINGGorai.012G106300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]