PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G106300.1

Common Name

B456_012G106300, LOC105779230

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 296aa MW: 33184.8 Da PI: 6.5754

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G106300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Gorai.012G106300.1 56 YSCSFCGREFTSAQALGGHMNVH 78 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.56E-7	53	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	54	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	6.7E-6	56	79	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.362	56	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0019	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MNQARYWMWT NRKPGLSSNN LQPSTKASYD DSWEEQAFAE DTAGSLGGCI WPPRSYSCSF 60 CGREFTSAQA LGGHMNVHRR DRARLKQSPT SQDGILHHDP QNSPNHIQKP FLPVSFQYQP 120 DEVCNFVYNP NPNSNHGTPP SPPSNSKDNC PEPTLVPALS SETAQDHPMK SPKTSTKSWS 180 NYVEDRYYHF SDLWNEVEKC PSILESGCSV KADYVQTDLS VCLNLIVRRG RTPPTTSGSK 240 EEIGCKRKRT DHTPIWPFLL KPISIETHHL QAAEVSELSP SSDDDIDLEL RLGPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	4e-11	51	78	2	29	superman protein
2l1o_A	4e-11	51	78	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458458.1	0.0	PREDICTED: transcriptional regulator SUPERMAN
TrEMBL	A0A0D2VXU7	0.0	A0A0D2VXU7_GOSRA; Uncharacterized protein
STRING	Gorai.012G106300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11047	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	2e-27	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	Gorai.012G106300.1
Entrez Gene	105779230

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]