PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G090300.1
Common NameB456_012G090300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 92aa    MW: 10405.2 Da    PI: 10.9348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G090300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.21.2e-141053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        r e+   rq  +skR++gilKKA+EL +L +++va++  s++g+
  Gorai.012G090300.1 10 RLEDLKARQAKYSKRKTGILKKAKELNILWEVDVALLFSSPSGR 53
                        5678889**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-20183IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.834161IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-13323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-151156IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGRKKLKIQR LEDLKARQAK YSKRKTGILK KAKELNILWE VDVALLFSSP SGRPTLFVGK  60
NSNGLSSILK RLSNLSFEER EESYTKMSCK S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458469.13e-49PREDICTED: MADS-box transcription factor 18-like
SwissprotQ7X9I09e-18AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0D2UZI69e-58A0A0D2UZI6_GOSRA; Uncharacterized protein
STRINGGorai.012G090300.12e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.11e-22AGAMOUS-like 33
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]