PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G081100.2

Common Name

B456_012G081100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 337aa MW: 37702.2 Da PI: 6.1899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G081100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.5e-15	217	264	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++f+ Lr+++P++ +K++ a+i+ A++YIk+L Gorai.012G081100.2 217 TTKHFATERERRVHLNDKFQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 264 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.33E-16	215	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.275	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-12	216	269	No hit	No description
Pfam	PF00010	9.1E-13	218	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-14	218	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNLQESGCFD PQYSMTHWHA LMVMGGLPSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA 60 STAVQMEIQQ HHLLDTTTTN SHFIRPELSY EQSNWDAADH QSFNMLLSSS SPEAAYPPTP 120 DLLNLFHLPP KCAFLPNSSI SFKSDSASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL 180 PADEKELYHD GDNGILEFTR DISMAAHAKG RDKAGKTTKH FATERERRVH LNDKFQALRT 240 MVPSPTKNDR ASIVGDAIDY IKELLRTVRE LKLVVEKKRC GQDRSKRLKT EETASAADAG 300 DGGCKLLGLG DPDQCYNTCL RSSWLQRKSK NSETPR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460865.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A0D2VWV3	0.0	A0A0D2VWV3_GOSRA; Uncharacterized protein
STRING	Gorai.012G081100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	6e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G081100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]