PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G081100.1
Common NameB456_012G081100, LOC105780880
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 426aa    MW: 47470.4 Da    PI: 6.0228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G081100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.3e-15217264254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er RR ++N++f+ Lr+++P++     +K++ a+i+  A++YIk+L
  Gorai.012G081100.1 217 TTKHFATERERRVHLNDKFQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 264
                         579**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15215283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-12216269No hitNo description
Gene3DG3DSA:4.10.280.103.4E-14218273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12218264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNLQESGCFD PQYSMTHWHA LMVMGGLPSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA  60
STAVQMEIQQ HHLLDTTTTN SHFIRPELSY EQSNWDAADH QSFNMLLSSS SPEAAYPPTP  120
DLLNLFHLPP KCAFLPNSSI SFKSDSASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL  180
PADEKELYHD GDNGILEFTR DISMAAHAKG RDKAGKTTKH FATERERRVH LNDKFQALRT  240
MVPSPTKNDR ASIVGDAIDY IKELLRTVRE LKLVVEKKRC GQDRSKRLKT EETASAADAG  300
DGGCKLLGLG DPDQCYNTCL RSSWLQRKSK NSEVDVRLID DEVTIKLVQR KKINCLLFVS  360
RLLDELQLDL HHVAGGNIGD YYSFLFNTKI YEGSSVYASA IANKLINVVD KQDAAAAPPT  420
SSTCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460865.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0D2V3140.0A0A0D2V314_GOSRA; Uncharacterized protein
STRINGGorai.012G081100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.18e-98bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]