PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 465aa MW: 52293.4 Da PI: 5.9965

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G080500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	458.4	4.4e-140	45	460	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA++v++g+le+a+ L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ s ++ +e+ ++klf+e++P+l Gorai.012G080500.1 45 LIRLLVACANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALANRMLKAWPGLHKALNSTKIS--SVPDEMLVQKLFFELCPFL 133 5799**********************************************************999998..599************ PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k++++++NqaI+ea+ege++vHiiD++ +++QW++L+q++++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ + Gorai.012G080500.1 134 KLAYIITNQAIVEAMEGEKMVHIIDLNSCEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-I 219 ******************************************************....9**********************.5 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..................................................desvslese 223 + +le+l+le+Lrvk+gEalaV++vlqlh+ll +s++ + + Gorai.012G080500.1 220 VCKLENLDLESLRVKTGEALAVSSVLQLHSLLatddevprrnfnsppvsktrvlqmtqrtfgewlekepvhiynpssdiassPSSLAPAPK 310 788************************************************************************865333333336 PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++L +++ lsPkv+vv+eqe++hn+++++er++eal++y+alfd+le++++r+ er+kvE++l+g+ei+n++aceg er+erhe+lek Gorai.012G080500.1 311 MGSFLAALRALSPKVMVVTEQESNHNGSTLMERVIEALNFYAALFDCLESTVSRAPIERQKVEKMLFGEEIKNIIACEGGERKERHEKLEK 401 999************************************************************************************ PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 W rle aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaW Gorai.012G080500.1 402 WILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKMKEENGCLVMCWQERPLYSISAW 460 ********************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.906	19	441	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-137	45	460	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MIPEGPSPVT SSPLQFFPWM SPSPGIGSPF PWLWELKPEE RGLWLIRLLV ACANHVAAGS 60 LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALANRMLKA WPGLHKALNS TKISSVPDEM 120 LVQKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLN SCEPAQWINL FQTFSARPEG 180 PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA 240 VSSVLQLHSL LATDDEVPRR NFNSPPVSKT RVLQMTQRTF GEWLEKEPVH IYNPSSDIAS 300 SPSSLAPAPK MGSFLAALRA LSPKVMVVTE QESNHNGSTL MERVIEALNF YAALFDCLES 360 TVSRAPIERQ KVEKMLFGEE IKNIIACEGG ERKERHEKLE KWILRLELAG FGRVPLSYHG 420 MLQAGRLLQT NNYDGYKMKE ENGCLVMCWQ ERPLYSISAW GFRR*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MIPEGPSPVT SSPLQFFPWM SPSPGIGSPF PWLWELKPEE RGLWLIRLLV ACANHVAAGS  60
LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALANRMLKA WPGLHKALNS TKISSVPDEM  120
LVQKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLN SCEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LATDDEVPRR NFNSPPVSKT RVLQMTQRTF GEWLEKEPVH IYNPSSDIAS  300
SPSSLAPAPK MGSFLAALRA LSPKVMVVTE QESNHNGSTL MERVIEALNF YAALFDCLES  360
TVSRAPIERQ KVEKMLFGEE IKNIIACEGG ERKERHEKLE KWILRLELAG FGRVPLSYHG  420
MLQAGRLLQT NNYDGYKMKE ENGCLVMCWQ ERPLYSISAW GFRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-68	37	460	10	377	Protein SCARECROW
5b3h_D	4e-68	37	460	10	377	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460946.1	0.0	PREDICTED: scarecrow-like protein 3
Swissprot	Q9LPR8	0.0	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A0D2V3J4	0.0	A0A0D2V3J4_GOSRA; Uncharacterized protein
STRING	Gorai.012G080500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4098	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	0.0	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Gorai.012G080500.1
Entrez Gene	105780952

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]