 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.012G078200.1 |
| Common Name | B456_012G078200, LOC105780690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
MYB |
| Protein Properties |
Length: 233aa MW: 25811 Da PI: 6.6307 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.012G078200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.1 | 9.6e-19 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw +
Gorai.012G078200.1 9 KGSWSPQEDANLIKLVEQHGPRNWSMISSSIP-GRSGKSCRLRWCNQ 54
799*****************************.***********985 PP
|
| 2 | Myb_DNA-binding | 52 | 1.6e-16 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+ Ed +++a++ +G++ W+tIar ++ gRt++ +k++w++
Gorai.012G078200.1 63 PFTAAEDAVIIQAHAVHGNK-WATIARLLP-GRTDNAIKNHWNST 105
89******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MINGGDRVKG SWSPQEDANL IKLVEQHGPR NWSMISSSIP GRSGKSCRLR WCNQLSPAVQ 60
HRPFTAAEDA VIIQAHAVHG NKWATIARLL PGRTDNAIKN HWNSTLRRKR ETELSSGSSE 120
SNSGDKRPSQ DASESESGNK KQCLGLVLHE QEQEHENVGM LEPKTLLTLS PPGENMEEEA 180
VVVVVKSEES GEEKQRAVVD ETACLLSIMQ RMIKEEVRSY IDKIIADQNP LK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 2e-39 | 8 | 109 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 8e-39 | 8 | 109 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 8e-39 | 8 | 109 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 3e-39 | 8 | 109 | 3 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 3e-39 | 8 | 109 | 3 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX614688 | 0.0 | JX614688.1 Gossypium hirsutum clone NBRI_GE58266 microsatellite sequence. |
