PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G078100.1

Common Name

B456_012G078100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 164aa MW: 18738.1 Da PI: 6.5264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G078100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	44	90	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN ++ Lrel+P + K++Ka+ L+ Ave +k+L Gorai.012G078100.1 44 TSHSQAEKRRRDRINAQLSALRELIPMS-----HKMDKAALLKSAVEQVKDL 90 68***********************8.....6***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.767	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-14	42	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-11	44	93	No hit	No description
Pfam	PF00010	4.8E-11	44	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MENYYQSSSW TDFSDKVSND SSFIVPWTIP VEEIAEDTAT TVYTSHSQAE KRRRDRINAQ 60 LSALRELIPM SHKMDKAALL KSAVEQVKDL KRKAAEISKA FNIPTEMDEV DWDRPQDINP 120 NGSRQGNDSK DKIFIRASVC WDDRPEVFTE LIKILKGLKA KHH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616445	1e-110	JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614715.1	1e-108	PREDICTED: transcription factor bHLH51-like
TrEMBL	A0A0D2V2Z1	1e-117	A0A0D2V2Z1_GOSRA; Uncharacterized protein
STRING	Gorai.012G078100.1	1e-118	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G078100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]