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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G074000.2 | ||||||||
Common Name | B456_012G074000, LOC105780288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 189aa MW: 21596.1 Da PI: 5.5963 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 133.8 | 5.8e-42 | 2 | 85 | 34 | 117 |
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LK+g e +++ Yah+e+n+tf rrcywlL+++le+ivlvhy+e+ Gorai.012G074000.2 2 PKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKIGDKERIHVDYAHGEDNSTFVRRCYWLLDKSLEQIVLVHYRET 85 9*********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 58.008 | 1 | 91 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-38 | 1 | 86 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.2E-37 | 2 | 84 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKIGDKERIH VDYAHGEDNS 60 TFVRRCYWLL DKSLEQIVLV HYRETNEVSL ATHSNSSLLI DQSTPLLVTE EFDSGIANTY 120 SEEPGESVNV RNHEMKLLEI NTLEWDELLV ANGANDSIAS RGDNVSCFDQ QNQMAVNDFS 180 NYVSRTIS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012459975.1 | 1e-139 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | Q9LSP8 | 1e-58 | CMTA6_ARATH; Calmodulin-binding transcription activator 6 | ||||
TrEMBL | A0A0D2VWL7 | 1e-138 | A0A0D2VWL7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G074000.1 | 1e-135 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 6e-63 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G074000.2 |
Entrez Gene | 105780288 |
Publications ? help Back to Top | |||
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