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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G063800.1 | ||||||||
Common Name | B456_012G063800, LOC105778822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 18943.1 Da PI: 6.7436 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.1 | 1.7e-44 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrrkC +dC++apyfp e+p+kf nvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ Gorai.012G063800.1 10 PCAACKCLRRKCMPDCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNDVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQ 100 7****************************************************************************************** PP DUF260 92 aelallke 99 +el+++++ Gorai.012G063800.1 101 KELDATNA 108 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.427 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-44 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASSSYSNPP CAACKCLRRK CMPDCIFAPY FPPEEPQKFI NVHKIFGASN VSKLLNDVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ KELDATNADI IRYAYNEMPQ 120 PPQPPAASQY GGRRTAAGHG SSGGGSFDQN SGFYYPSQWN NNDPSGDNES GSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-64 | 10 | 118 | 11 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-64 | 10 | 118 | 11 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582213 | 1e-156 | JX582213.1 Gossypium hirsutum clone NBRI_GE15003 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458035.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_012458036.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_012458037.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_016679016.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_016679017.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_017614825.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_017614826.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 8e-66 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0D2RYJ3 | 1e-126 | A0A0D2RYJ3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8ILK5 | 1e-126 | A0A1U8ILK5_GOSHI; LOB domain-containing protein 25-like | ||||
TrEMBL | A0A2P5XNB6 | 1e-126 | A0A2P5XNB6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G063800.1 | 1e-127 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-67 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G063800.1 |
Entrez Gene | 105778822 |
Publications ? help Back to Top | |||
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