PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G061800.1 | ||||||||
Common Name | B456_012G061800, LOC105778805 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 25399.6 Da PI: 7.7141 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.6e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+ll+d+vk +G+g+W++Ia++ g++R++k+c++rw +yl Gorai.012G061800.1 13 KGLWTMEEDKLLIDYVKVHGKGQWNKIANRTGLKRSGKSCRLRWMNYL 60 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.5 | 7.1e-19 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g +++eE++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l Gorai.012G061800.1 66 KGDFSEEEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNSHL 111 689*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.04 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.34E-31 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.43E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 29.028 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-19 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-18 | 66 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-28 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-13 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0090377 | Biological Process | seed trichome initiation | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSMKKEGEIL YKKGLWTMEE DKLLIDYVKV HGKGQWNKIA NRTGLKRSGK SCRLRWMNYL 60 SPNVKKGDFS EEEEDLIIRL HKLLGNRWSL IAKRVPGRTD NQVKNYWNSH LRKKLGIIDQ 120 NETRIDFCQS SKQVKVCHVD EAATDPSPGH GTTTETTGIT VDQSNQQEAI DHRVLNNTTQ 180 ESMTSESYIN TFWIPDHDYE LSTLAMIDHF HEYSSFHLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT751523 | 0.0 | KT751523.1 Gossypium hirsutum MYB109 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458020.1 | 1e-165 | PREDICTED: transcription factor WER | ||||
Swissprot | Q9SEI0 | 2e-73 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A0D2V2L3 | 1e-164 | A0A0D2V2L3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G061800.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-75 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G061800.1 |
Entrez Gene | 105778805 |