PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G049800.1
Common NameB456_012G049800, LOC105780967
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 486aa    MW: 53896.7 Da    PI: 7.3304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G049800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-054971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cg+ F +   L  H+r H
  Gorai.012G049800.1 49 FQCKACGRQFESMKALFGHMRHH 71
                        89*******************99 PP
2zf-C2H220.61.2e-0681101323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cg+ F++   L+ H+r+H
  Gorai.012G049800.1  81 CQECGRKFKSLKALTAHMRLH 101
                         *******************99 PP
3zf-C2H215.55e-05319341123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C +C+k+F+++  L  H+  H
  Gorai.012G049800.1 319 YRCRICNKTFKSHQALGGHQTIH 341
                         9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00554971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8634976IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-949101No hitNo description
PfamPF139123.1E-74973IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001979101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9779101IPR007087Zinc finger, C2H2
PfamPF139123.1E-680101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-6316347No hitNo description
SMARTSM003550.0039319341IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-6319343IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.074319346IPR007087Zinc finger, C2H2
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
PfamPF139128.5E-11399422IPR007087Zinc finger, C2H2
SMARTSM003551.3400422IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429400427IPR007087Zinc finger, C2H2
PROSITE patternPS000280402422IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEKKCGKRKA KEKMGFQGYG LRDNPKKSWK SLGFNGDDDN AATSSTLEFQ CKACGRQFES  60
MKALFGHMRH HSARERKEVN CQECGRKFKS LKALTAHMRL HPLKSVTVKR KRSKRSRYNS  120
APNSSLSSLN ESSGLVEIDQ DVEDAALCLI MMSRGVKNCT EFNCFWESCG NNDFEIKSFH  180
QNKEILQTSF GYGDELDSYA SGSMNVFHEK NISECKELDS GILSAKEKNA ESGFELYETE  240
IKGTLSGEIM NLKSIEAEPR QDLMEGLDLT GLGSTKSSSS KDAMFDACDS GPVDDASNKL  300
ISIPLNSEVS DDSLRKNKYR CRICNKTFKS HQALGGHQTI HRKSNTYAEP VEDHEKTTHI  360
SSSPEIEAGC KLVKVEYVEH SVDQEMNEVT SSETRVYKVH KCLICLKVFG SGQALGGHKR  420
SHISRDPGTG DKQPAKQLDL SNISDVIDLN LPVMHNEEAN GDTGLKLCRL GTDCKNEALL  480
SLVAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460974.10.0PREDICTED: zinc finger protein 521-like
RefseqXP_012460975.10.0PREDICTED: zinc finger protein 521-like
TrEMBLA0A0D2TIS30.0A0A0D2TIS3_GOSRA; Uncharacterized protein
STRINGGorai.012G049800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-16C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]