PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G036100.1 | ||||||||
Common Name | B456_012G036100, LOC105779242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 23729 Da PI: 5.3195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.2 | 9.6e-34 | 12 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeelv ++L +k + ++ ++i+e+d+++++Pw+L+ k+ + k+++fFs++ +nr+ ++gyWk+ +++ Gorai.012G036100.1 12 LPPGFRFCPTDEELVLHFLYPKSLRLPCYS-NIIPELDLHRLHPWELDGKALMSGKRYFFFSQK--------MENRVLENGYWKQLDMEEP 93 79*************************988.89**************96555556666666665........3589*************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s ++ +vg+kk + fy g ap g kt+Wvm+ey+l Gorai.012G036100.1 94 IFSGGSGKVGVKKLFEFYIGGAPFGMKTNWVMQEYHL 130 ****9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-42 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.717 | 12 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-21 | 13 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEMEDGRSVN HLPPGFRFCP TDEELVLHFL YPKSLRLPCY SNIIPELDLH RLHPWELDGK 60 ALMSGKRYFF FSQKMENRVL ENGYWKQLDM EEPIFSGGSG KVGVKKLFEF YIGGAPFGMK 120 TNWVMQEYHL CNWGSALSFH YPKTKGIRKL DSNYKWVLCK VEEHKGNAQS FNYSDEDGSE 180 LSCLDEMFLS LDDDLDDISS SHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 12 | 169 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 12 | 169 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578970 | 8e-86 | JX578970.1 Gossypium hirsutum clone NBRI_GE11114 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458466.1 | 1e-151 | PREDICTED: NAC domain-containing protein 68-like isoform X2 | ||||
TrEMBL | A0A0D2V174 | 1e-150 | A0A0D2V174_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G036100.1 | 1e-150 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-40 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G036100.1 |
Entrez Gene | 105779242 |
Publications ? help Back to Top | |||
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