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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.012G015900.1 |
Common Name | B456_012G015900, LOC105778739 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 217aa MW: 23578.9 Da PI: 8.7887 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.012G015900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+
Gorai.012G015900.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQ 134
7****************************************************************************************** PP
DUF260 92 aelallkee 100
ae++++++e
Gorai.012G015900.1 135 AEVHAVRAE 143
****99987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MSGERERFDE IGKKIKREGG VSCHQQMGRR HILSPPGTLN TITPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM 120 GAISALQHQV QSLQAEVHAV RAELLKYKYR EANFIPSSLV ALLSSGAVSV AAPPPPPQPP 180 PPPLPTTSTS TSSMYTQLTT AADYTTISNE NVSYFG*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ525765 | 1e-146 | HQ525765.1 Gossypium herbaceum clone NBRI_D_2250-1 simple sequence repeat marker, mRNA sequence. |
GenBank | HQ527996 | 1e-146 | HQ527996.1 Gossypium herbaceum clone NBRI_D_2250-2 simple sequence repeat marker, mRNA sequence. |