PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G010900.1
Common NameB456_012G010900, LOC105780460
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 337aa    MW: 36918.4 Da    PI: 8.5559
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G010900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.76.2e-31187243158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  Gorai.012G010900.1 187 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 243
                         699***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-36185246IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631186246IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-25189243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-21189211IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-21220243IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQTLHKKDCV LSSHLTCTNV VRCSSWVNSM ESHVQQSSMS ESLNLNMGIV PQHFHNSKQL  60
SFQFQDQDSS STQSTGQSYP EAASVGDSNL YRQSSISASS GGNETPGKLV EHHAKLASSM  120
GTQEYVFSPS QVDYSKSIQA HIPLHYAEPY FGGVVTAVCP PQAMIHHPCM LAMLPARVPL  180
PLELTEDETI YVNAKQYGAI LRRRQYRAKL EAQNKLIKVR KPYLHESRHL HALKRARGNG  240
GRFLNTKKLQ ESKPIPTSHG LDASRSPQLH LCANMSNQLE NYKDAASTTT CSDVTSASNS  300
DEMLQQPDFR FSGYSSLIAG ATRGSGGNLH HLSGCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-17187248263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460269.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_012460270.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A0D2V0530.0A0A0D2V053_GOSRA; Uncharacterized protein
STRINGGorai.012G010900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-74nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]