PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G009000.1
Common NameB456_012G009000, LOC105779492
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1103aa    MW: 121945 Da    PI: 6.5676
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G009000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.6e-23137238199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       ++k+++  +l  +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F  
  Gorai.012G009000.1 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMQKPAQ--ELEARDLHENVWKFRHIYRGKPQRHLLTTGWSLFVSGKRLFAGDSVLFI- 224
                         99*****************************95444444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Gorai.012G009000.1 225 -RDETQQLLLGIRRA 238
                         .5578889***9997 PP
2Auxin_resp1171.6e-38263346183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+W +L+
  Gorai.012G009000.1 263 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWHNLQ 346
                         79********************************9879*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-41128266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40128252IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-18136228No hitNo description
PfamPF023626.2E-21137238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.885137239IPR003340B3 DNA binding domain
SMARTSM010199.8E-23137239IPR003340B3 DNA binding domain
PfamPF065075.4E-34263346IPR010525Auxin response factor
PfamPF023091.3E-69881075IPR033389AUX/IAA domain
PROSITE profilePS5174527.029901074IPR000270PB1 domain
SuperFamilySSF542777.46E-710031068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MNVVAAGVES TSNPAAPGSA EGEAPERRHI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKRD VDAQILNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSSFDKEAL  120
LRSDLSLKSN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QKPAQELEAR  180
DLHENVWKFR HIYRGKPQRH LLTTGWSLFV SGKRLFAGDS VLFIRDETQQ LLLGIRRANR  240
QPANLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASLSEFVIPL AKYYKAVYNH  300
QISPGMRFRM MFETEESGTR RYMGTITGIS DIDPVRWKNS QWHNLQVGWD ESTAGERRNR  360
VSIWEIEPVT APFFICPSPL FRSKRPRQPG MPADEYSDLD NLFKRPMPWL GDDICLKDSD  420
AHPGLSLVQW MNMQQNPLLA NSMQPNFMQS LAGSTMQNFD GADLSHQMGL SAPQMPQPNN  480
LQFNAHRLPQ KVQQLDQVPK LPSTMNSLGS IIQPQQLNDM TQQSRQNLVA QPLPSSQVLQ  540
PQALVQSNNI LQQQQTSNPT HQLPLSLPQN LQQHLVGPNH LQNLMHSQLP DPLNQHLQVP  600
DNQVQFQLMQ KLQQQQQLLL AQQSALQQPG QLAQPQDQQR QLLDASQSFS SSVTASQVLE  660
MPQNIPTLLP QSNVAPQQMP KNNSQANVWF SQPPLQSKVQ QQQTGMLPEV PGLVGPFQTT  720
ATNQFSTAVS SVMMSAAVAA PSVITDDNPS CSTSPSTNCP SVLQPMIDSR VHRSTGLGDD  780
ISQSTATVLN PNAVETMSTK ANMVKEQQQK SVKPLLNISK SQNQGSFAPQ NCINGATAHA  840
DCLDTSSSTT SVCLSQSDVH LHQNTPSYNP QTMLLRDTSQ DGEVQAYPRN SVSYGNNMDS  900
QIEMSMNSDT LSAKGMMGLG KDFSNHLSSG GVLASYENPK DTQQELSSSM VSQSYRVPDM  960
AFNSIDPTIN HSSFINRSGW TPPSQFQRLR TYTKVYKRGA VGRSIDITRY SGYDELKQDL  1020
ARRFGIEGQL EDRGRVGWKL VYVDHENDVL LVGDDPWEEF INCVRCIKIL SPQEVQQMSV  1080
DGEFGNSVLP NQACSSSGNG NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1583036751388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458721.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458722.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458723.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458724.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A0D2VU040.0A0A0D2VU04_GOSRA; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]