PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G292100.1 | ||||||||
Common Name | B456_011G292100, LOC105778418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26284.9 Da PI: 8.6809 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.3e-14 | 64 | 110 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriNs + Lr+l+Pk+ K++Ka+ L A+e +k+L Gorai.011G292100.1 64 KSHSEAEKRRRDRINSQLTALRKLIPKS-----NKMDKAALLGSAIEQVKDL 110 79*************************7.....5*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-14 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 64 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-11 | 64 | 113 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-15 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-12 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 6.03E-6 | 142 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.3E-5 | 142 | 203 | No hit | No description |
PROSITE profile | PS51671 | 8.803 | 144 | 220 | IPR002912 | ACT domain |
CDD | cd04873 | 1.79E-7 | 145 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MENCYPFSLL EPPNCDGCNA AAISNEPPFV VPWPVEPLFS ASSSVRCHGF TSPAIPDKAT 60 VASKSHSEAE KRRRDRINSQ LTALRKLIPK SNKMDKAALL GSAIEQVKDL KRKATEIGKA 120 FAIPSETDEV SVDYNVPEDK TFIRVSICCD DRPEVFSELI RVLKGLRLSI VEAEISSVGG 180 RTKSNLILCN ESDNREGVSS NLKQSLNVVV NKINALSSDE SKSNYRIRSK RQRLFLSS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457563.1 | 1e-173 | PREDICTED: transcription factor bHLH51 | ||||
Swissprot | Q9XEF0 | 1e-51 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A0D2TF81 | 1e-172 | A0A0D2TF81_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G292100.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G292100.1 |
Entrez Gene | 105778418 |
Publications ? help Back to Top | |||
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