PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 319aa MW: 35880.1 Da PI: 8.325

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G291200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	73	126	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR Gorai.011G291200.1 73 PRLRWTPDLHLRFVHAVEKLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRG 126 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-30	69	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.285	69	129	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-15	70	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-23	73	127	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-10	74	125	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASVDTFEKN RNNNRDLADE EEEEEEEEEE EDRNKINYKT GNEGESSSNS SVEETGKKST 60 TGSVRPYNRS KTPRLRWTPD LHLRFVHAVE KLGGQDRATP KLVLQLMNIK GLSIAHVKSH 120 LQMYRGKKID DPNQVIHKKE IVFQNGDHHH HIHKLSQLPM RQSFNNQSPS STFRYGDVIS 180 WRGNNNKNVL DMTSKGLYCS VATRLFSSCN NYNSLSFSSQ RPTMGTNCTP LKRKMISSMV 240 SNIEDRLDLD LSLKVTTVAG EFDEKGSLAL DDSGGLSLSL ASSSSFSKLC RLNKEVKYGD 300 GNRKQEVRTM ASTLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	74	125	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	74	125	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	74	125	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	74	125	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	74	125	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452930.1	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0D2UZ67	0.0	A0A0D2UZ67_GOSRA; Uncharacterized protein
STRING	Gorai.011G291200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-47	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G291200.1
Entrez Gene	105774908

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]