PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G279800.1
Common NameB456_011G279800, LOC105776640
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 277aa    MW: 31521.2 Da    PI: 9.4989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G279800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-093074446
                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        WT+eE +++ +a + +G +   +W ++a++++ g+t  +++  ++ 
  Gorai.011G279800.1 30 WTKEENKRFEHALAIYGDDvpdRWIKVAEMIP-GKTVLDVIKQYRE 74
                        *****************99*************.*******999986 PP
2Myb_DNA-binding39.41.4e-12129173347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Gorai.011G279800.1 129 PWTEDEHRRFLMGLVKYGKGDWRNISRNFVVSKTPTQVASHAQKY 173
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-42374IPR009057Homeodomain-like
PROSITE profilePS5129310.4932580IPR017884SANT domain
SMARTSM007175.2E-82678IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-122882IPR009057Homeodomain-like
CDDcd001672.12E-83075No hitNo description
PfamPF002491.5E-83074IPR001005SANT/Myb domain
PROSITE profilePS5129419.617122178IPR017930Myb domain
SuperFamilySSF466895.87E-15124177IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-18125177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.8E-11126178IPR009057Homeodomain-like
SMARTSM007172.1E-10126176IPR001005SANT/Myb domain
PfamPF002496.5E-10129173IPR001005SANT/Myb domain
CDDcd001671.68E-8129173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNFSSMEALF STSFMSNMDW FHQENQNTYW TKEENKRFEH ALAIYGDDVP DRWIKVAEMI  60
PGKTVLDVIK QYRELEEDVS DIEAGRIPIP GYPTSSFTLE LVDNHDFDGY RKRPNGAKGH  120
DHERKKGVPW TEDEHRRFLM GLVKYGKGDW RNISRNFVVS KTPTQVASHA QKYYQRQLSG  180
GKDKRRPSIH DITVLNLSST TTFSDHRKAV SINQSNVLTL QHKIASMSKA VGLNGSVTVF  240
DSGNGNRFTS SQYQAAQNLY GNAYHGAHIK HQSSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1530951176RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454881.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2UYV70.0A0A0D2UYV7_GOSRA; Uncharacterized protein
STRINGGorai.011G279800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-97MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]