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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.011G271300.1 |
| Common Name | B456_011G271300 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 361aa MW: 40958.2 Da PI: 5.0211 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.011G271300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 137.3 | 9.5e-43 | 13 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
ppG+rF+P+d+e++++yL++k+ g +l+ + ikev +y+++P++L + ++ +e+yfF++rd+kya+g+r+ r + +gyWkatg
Gorai.011G271300.1 13 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVLLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARNAGNGYWKATG 102
9*************************999.77**************8434443222245699***************************** PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk +++ kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l
Gorai.011G271300.1 103 ADKLICR-KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 142
*****99.9999***************************87 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MEEKDEACLR SIPPGYRFKP RDDEIINFYL RPKIFGLPLP PNRIKEVLLY NYDPQTLTAM 60
SNNALSNGVG NEYYFFTPRD RKYANGSRPA RNAGNGYWKA TGADKLICRK GKKIGLKKSL 120
VFYQGKPPKG VKTNWLMHEY VLTDAPIRKR LGNEDMRLDD WVLCRVYKNP RVKKLEHETL 180
EDGNQEEADT ATTVAYDGAQ MVQQEGHQVE CEAEAARSAI PPYNGIQMVE NGIAFATLYE 240
PINTSSQMLE HGIAPLYEPI NTSSQMLENG IAFAPLYEPI NVQMPQGTSS WFPEQVYSTP 300
YFNQYGDYTF EHPTLEGFNM PDCGVYDPAL FQINMQQHFS SDFDLDQLNQ DPHSGLPPPL 360
*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-50 | 1 | 169 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-50 | 1 | 169 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-50 | 1 | 169 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-50 | 1 | 169 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-50 | 1 | 169 | 9 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-50 | 1 | 169 | 6 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-50 | 1 | 169 | 6 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC847249 | 0.0 | KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds. |
