PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G254200.1 | ||||||||
Common Name | B456_011G254200, LOC105778705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 19890.6 Da PI: 8.9229 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Gorai.011G254200.1 90 HECSICGLEFSIGQALGGHMRRH 112 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.35E-9 | 44 | 112 | No hit | No description |
Pfam | PF13912 | 2.3E-12 | 45 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-10 | 89 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKRSFASEME NNLALANCLM LLSQGRNQYD HTIFNDTNNN NPTRVFECKT CNRQFASFQA 60 LGGHRASHKK PKLLDGGSTE NQPPAKPKTH ECSICGLEFS IGQALGGHMR RHRGGLSGNH 120 HQYGPLSSSS SSQEMVTTPI VKKSNSRRVL CLDLNLTPLE NDWELFKLGK AALPIDCFF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457912.1 | 1e-132 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_016724658.1 | 1e-132 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | A0A0D2RSU3 | 1e-131 | A0A0D2RSU3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8MGE3 | 1e-131 | A0A1U8MGE3_GOSHI; zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2P5Q7K3 | 1e-131 | A0A2P5Q7K3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G254200.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-30 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G254200.1 |
Entrez Gene | 105778705 |
Publications ? help Back to Top | |||
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