PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G240800.4

Common Name

B456_011G240800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1400aa MW: 152518 Da PI: 5.4407

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G240800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	491	532	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + +G++ +++Ia+ + ++t +c+++++k Gorai.011G240800.4 491 PWTSQEKEIFMAKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 532 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.5	9.4e-11	709	749	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ Gorai.011G240800.4 709 HWTDEEKSAFLQAVSSYGKD-FDMISRYVG-TRSRDQCKVFFS 749 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-13	475	536	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.387	487	538	IPR017884	SANT domain
SMART	SM00717	4.0E-7	488	536	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-5	491	532	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.035	705	756	IPR017884	SANT domain
SMART	SM00717	4.5E-9	706	754	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	707	750	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.04E-11	707	756	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	709	749	IPR001005	SANT/Myb domain
CDD	cd00167	6.23E-8	710	748	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1400 aa Download sequence Send to blast
MIPFRLLSLF LHIGCNDYTF SFITTILLVV AGVEEKSFGK AANVDNDTSN LCGSPTLGSQ 60 NHLEGPSFNL EKLDINSIIN MGSSLTNLLQ ADDPCTVDSS FVRSTAISKL LLWKSDVLKA 120 LEMTESEIDS LESELKLLKG DSRSRCPCPA TSSSFPEEHG KACGEQEAAS SLIPRPAPLQ 180 IDACGDVLVG KQPLCNGVLE EVNDDVKDGD IDSPGTATSK FMEPLSLEKA VSPSDVVKFH 240 ECSGDFGTVQ LMSMGKVILA TGSGNAGTAT TISAEGSVLK RIDNDAHVPE SSNSDVGDEN 300 VMYEMILATN KELAHVASEV FNKLLPKDQY NSEIGNVACT QSDSAIRNKI AIRKQYLRFK 360 ERVLTIKFKA FQNAWKEDLR SPSMRKYRAK SQKKYEFSLR SAHGGYQKHR SSIHSRLTSP 420 AGNPILEPRA EMINFTSKLL LGSHGRLYRN ALKMPALILD EKEKKVSRFI SSNGLVEDPC 480 AIEKERALIN PWTSQEKEIF MAKLAAFGKD FRKIASFLDH KTTADCVEFY YKNHKSECFE 540 KTKKNDLSKQ QGKSAVNTYL LTSGKKRGRE LNAASLDVLG AASVIAAHAE SGMRNRHTSG 600 RILLRGRFDS KRSQLDDSIA ERSSNFDIVG SDQDTVAADV LAGICGSFSS EAMSSCITSS 660 ADPGEGYHHD WKCHKVDSVV KRPSTSDVLQ NVDGDTCSDE SCGEMESSHW TDEEKSAFLQ 720 AVSSYGKDFD MISRYVGTRS RDQCKVFFSK ARKCLGLDLI HSRTRNMGTP MSDDANGGET 780 DTEDACVQES SVVCSEKLGS KVEEDLPSTI VSMNVDESDL TREANLQSDH NISEGNIERL 840 ADHKDSVAAE VNFSNVDHTE PISECGAGDM DVDSNQAESL HVQNNVALAN ISALENHVAE 900 EGVSVAVSAS HGGTGDCHPS LDASVEPKSG AAVLSTEGFG NNLEAQETLS SKNVMDVRDT 960 RCNAEIDSQV ICRPDLDKSS GESIDKNSCL DFSFNSEGLR QVPLDLGSAG KPSILLFPNE 1020 NFSAKNSASH SDASQCEKIC NQDRLSATLA YQGNEDKQPN NAVSGHEPEH LSGKPSVDLA 1080 ELQISTLKEM DIDIGHSQLP EVKRLSTSGK GVTGLYLVQD YLQKCNGPKS PSEFPQLVQN 1140 LEQTNSRPKS HSRSLSDTEK PCRNGNVKLF GQILNSSSQD DGKIRFPEQS MKSSNLNFRG 1200 HNNVDGNASF SKFDQNIIFA PENVPRRSYG FWDGNRIQTG LSSLPDSEIL VAKYPAAFVN 1260 YPASSSQMQL QASRTIVRNT DRNMNGVSVF TPREISSNNG VMDYQVYGGH DCTKVVVPFA 1320 MDMKRREMFS EMQRRNGFDA ISNLQHQGRG MVGMNVVGTG VGGVVGGSCP NLSDPVAVLR 1380 MQYAKTEQYG GQSGSIMRE*

Sequence ? help Back to Top

Protein Sequence Length: 1400 aa Download sequence Send to blast

MIPFRLLSLF LHIGCNDYTF SFITTILLVV AGVEEKSFGK AANVDNDTSN LCGSPTLGSQ  60
NHLEGPSFNL EKLDINSIIN MGSSLTNLLQ ADDPCTVDSS FVRSTAISKL LLWKSDVLKA  120
LEMTESEIDS LESELKLLKG DSRSRCPCPA TSSSFPEEHG KACGEQEAAS SLIPRPAPLQ  180
IDACGDVLVG KQPLCNGVLE EVNDDVKDGD IDSPGTATSK FMEPLSLEKA VSPSDVVKFH  240
ECSGDFGTVQ LMSMGKVILA TGSGNAGTAT TISAEGSVLK RIDNDAHVPE SSNSDVGDEN  300
VMYEMILATN KELAHVASEV FNKLLPKDQY NSEIGNVACT QSDSAIRNKI AIRKQYLRFK  360
ERVLTIKFKA FQNAWKEDLR SPSMRKYRAK SQKKYEFSLR SAHGGYQKHR SSIHSRLTSP  420
AGNPILEPRA EMINFTSKLL LGSHGRLYRN ALKMPALILD EKEKKVSRFI SSNGLVEDPC  480
AIEKERALIN PWTSQEKEIF MAKLAAFGKD FRKIASFLDH KTTADCVEFY YKNHKSECFE  540
KTKKNDLSKQ QGKSAVNTYL LTSGKKRGRE LNAASLDVLG AASVIAAHAE SGMRNRHTSG  600
RILLRGRFDS KRSQLDDSIA ERSSNFDIVG SDQDTVAADV LAGICGSFSS EAMSSCITSS  660
ADPGEGYHHD WKCHKVDSVV KRPSTSDVLQ NVDGDTCSDE SCGEMESSHW TDEEKSAFLQ  720
AVSSYGKDFD MISRYVGTRS RDQCKVFFSK ARKCLGLDLI HSRTRNMGTP MSDDANGGET  780
DTEDACVQES SVVCSEKLGS KVEEDLPSTI VSMNVDESDL TREANLQSDH NISEGNIERL  840
ADHKDSVAAE VNFSNVDHTE PISECGAGDM DVDSNQAESL HVQNNVALAN ISALENHVAE  900
EGVSVAVSAS HGGTGDCHPS LDASVEPKSG AAVLSTEGFG NNLEAQETLS SKNVMDVRDT  960
RCNAEIDSQV ICRPDLDKSS GESIDKNSCL DFSFNSEGLR QVPLDLGSAG KPSILLFPNE  1020
NFSAKNSASH SDASQCEKIC NQDRLSATLA YQGNEDKQPN NAVSGHEPEH LSGKPSVDLA  1080
ELQISTLKEM DIDIGHSQLP EVKRLSTSGK GVTGLYLVQD YLQKCNGPKS PSEFPQLVQN  1140
LEQTNSRPKS HSRSLSDTEK PCRNGNVKLF GQILNSSSQD DGKIRFPEQS MKSSNLNFRG  1200
HNNVDGNASF SKFDQNIIFA PENVPRRSYG FWDGNRIQTG LSSLPDSEIL VAKYPAAFVN  1260
YPASSSQMQL QASRTIVRNT DRNMNGVSVF TPREISSNNG VMDYQVYGGH DCTKVVVPFA  1320
MDMKRREMFS EMQRRNGFDA ISNLQHQGRG MVGMNVVGTG VGGVVGGSCP NLSDPVAVLR  1380
MQYAKTEQYG GQSGSIMRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	449	540	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	449	540	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454301.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
Refseq	XP_012454302.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
TrEMBL	A0A0D2TD14	0.0	A0A0D2TD14_GOSRA; Uncharacterized protein
STRING	Gorai.011G240800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-149	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G240800.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]