PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G240800.1

Common Name

B456_011G240800, LOC105776280

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1722aa MW: 188089 Da PI: 6.2216

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G240800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	813	854	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + +G++ +++Ia+ + ++t +c+++++k Gorai.011G240800.1 813 PWTSQEKEIFMAKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 854 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.2	1.2e-10	1031	1071	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ Gorai.011G240800.1 1031 HWTDEEKSAFLQAVSSYGKD-FDMISRYVG-TRSRDQCKVFFS 1071 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.32E-13	797	858	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.387	809	860	IPR017884	SANT domain
SMART	SM00717	4.0E-7	810	858	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-5	813	854	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.035	1027	1078	IPR017884	SANT domain
SMART	SM00717	4.5E-9	1028	1076	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-6	1029	1072	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.38E-11	1029	1078	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	1031	1071	IPR001005	SANT/Myb domain
CDD	cd00167	7.91E-8	1032	1070	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1722 aa Download sequence Send to blast
MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR 60 RPPGHGRQGS WHLFAEENGG HGYVPSRSSN KILDDENFRQ LDSCVDGKYS RNSRENNRGS 120 SSQRDWRGHS WENCNGSPST PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQH 180 DNKTIAVNGL GTGQKCQSEN FVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG 240 EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD 300 TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF 360 GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD 420 SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPEE 480 HGKACGEQEA ASSLIPRPAP LQIDACGDVL VGKQPLCNGV LEEVNDDVKD GDIDSPGTAT 540 SKFMEPLSLE KAVSPSDVVK FHECSGDFGT VQLMSMGKVI LATGSGNAGT ATTISAEGSV 600 LKRIDNDAHV PESSNSDVGD ENVMYEMILA TNKELAHVAS EVFNKLLPKD QYNSEIGNVA 660 CTQSDSAIRN KIAIRKQYLR FKERVLTIKF KAFQNAWKED LRSPSMRKYR AKSQKKYEFS 720 LRSAHGGYQK HRSSIHSRLT SPAGNPILEP RAEMINFTSK LLLGSHGRLY RNALKMPALI 780 LDEKEKKVSR FISSNGLVED PCAIEKERAL INPWTSQEKE IFMAKLAAFG KDFRKIASFL 840 DHKTTADCVE FYYKNHKSEC FEKTKKNDLS KQQGKSAVNT YLLTSGKKRG RELNAASLDV 900 LGAASVIAAH AESGMRNRHT SGRILLRGRF DSKRSQLDDS IAERSSNFDI VGSDQDTVAA 960 DVLAGICGSF SSEAMSSCIT SSADPGEGYH HDWKCHKVDS VVKRPSTSDV LQNVDGDTCS 1020 DESCGEMESS HWTDEEKSAF LQAVSSYGKD FDMISRYVGT RSRDQCKVFF SKARKCLGLD 1080 LIHSRTRNMG TPMSDDANGG ETDTEDACVQ ESSVVCSEKL GSKVEEDLPS TIVSMNVDES 1140 DLTREANLQS DHNISEGNIE RLADHKDSVA AEVNFSNVDH TEPISECGAG DMDVDSNQAE 1200 SLHVQNNVAL ANISALENHV AEEGVSVAVS ASHGGTGDCH PSLDASVEPK SGAAVLSTEG 1260 FGNNLEAQET LSSKNVMDVR DTRCNAEIDS QVICRPDLDK SSGESIDKNS CLDFSFNSEG 1320 LRQVPLDLGS AGKPSILLFP NENFSAKNSA SHSDASQCEK ICNQDRLSAT LAYQGNEDKQ 1380 PNNAVSGHEP EHLSGKPSVD LAELQISTLK EMDIDIGHSQ LPEVKRLSTS GKGVTGLYLV 1440 QDYLQKCNGP KSPSEFPQLV QNLEQTNSRP KSHSRSLSDT EKPCRNGNVK LFGQILNSSS 1500 QDDGKIRFPE QSMKSSNLNF RGHNNVDGNA SFSKFDQNII FAPENVPRRS YGFWDGNRIQ 1560 TGLSSLPDSE ILVAKYPAAF VNYPASSSQM QLQASRTIVR NTDRNMNGVS VFTPREISSN 1620 NGVMDYQVYG GHDCTKVVVP FAMDMKRREM FSEMQRRNGF DAISNLQHQG RGMVGMNVVG 1680 TGVGGVVGGS CPNLSDPVAV LRMQYAKTEQ YGGQSGSIMR E*

Sequence ? help Back to Top

Protein Sequence Length: 1722 aa Download sequence Send to blast

MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR  60
RPPGHGRQGS WHLFAEENGG HGYVPSRSSN KILDDENFRQ LDSCVDGKYS RNSRENNRGS  120
SSQRDWRGHS WENCNGSPST PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQH  180
DNKTIAVNGL GTGQKCQSEN FVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG  240
EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD  300
TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF  360
GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD  420
SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPEE  480
HGKACGEQEA ASSLIPRPAP LQIDACGDVL VGKQPLCNGV LEEVNDDVKD GDIDSPGTAT  540
SKFMEPLSLE KAVSPSDVVK FHECSGDFGT VQLMSMGKVI LATGSGNAGT ATTISAEGSV  600
LKRIDNDAHV PESSNSDVGD ENVMYEMILA TNKELAHVAS EVFNKLLPKD QYNSEIGNVA  660
CTQSDSAIRN KIAIRKQYLR FKERVLTIKF KAFQNAWKED LRSPSMRKYR AKSQKKYEFS  720
LRSAHGGYQK HRSSIHSRLT SPAGNPILEP RAEMINFTSK LLLGSHGRLY RNALKMPALI  780
LDEKEKKVSR FISSNGLVED PCAIEKERAL INPWTSQEKE IFMAKLAAFG KDFRKIASFL  840
DHKTTADCVE FYYKNHKSEC FEKTKKNDLS KQQGKSAVNT YLLTSGKKRG RELNAASLDV  900
LGAASVIAAH AESGMRNRHT SGRILLRGRF DSKRSQLDDS IAERSSNFDI VGSDQDTVAA  960
DVLAGICGSF SSEAMSSCIT SSADPGEGYH HDWKCHKVDS VVKRPSTSDV LQNVDGDTCS  1020
DESCGEMESS HWTDEEKSAF LQAVSSYGKD FDMISRYVGT RSRDQCKVFF SKARKCLGLD  1080
LIHSRTRNMG TPMSDDANGG ETDTEDACVQ ESSVVCSEKL GSKVEEDLPS TIVSMNVDES  1140
DLTREANLQS DHNISEGNIE RLADHKDSVA AEVNFSNVDH TEPISECGAG DMDVDSNQAE  1200
SLHVQNNVAL ANISALENHV AEEGVSVAVS ASHGGTGDCH PSLDASVEPK SGAAVLSTEG  1260
FGNNLEAQET LSSKNVMDVR DTRCNAEIDS QVICRPDLDK SSGESIDKNS CLDFSFNSEG  1320
LRQVPLDLGS AGKPSILLFP NENFSAKNSA SHSDASQCEK ICNQDRLSAT LAYQGNEDKQ  1380
PNNAVSGHEP EHLSGKPSVD LAELQISTLK EMDIDIGHSQ LPEVKRLSTS GKGVTGLYLV  1440
QDYLQKCNGP KSPSEFPQLV QNLEQTNSRP KSHSRSLSDT EKPCRNGNVK LFGQILNSSS  1500
QDDGKIRFPE QSMKSSNLNF RGHNNVDGNA SFSKFDQNII FAPENVPRRS YGFWDGNRIQ  1560
TGLSSLPDSE ILVAKYPAAF VNYPASSSQM QLQASRTIVR NTDRNMNGVS VFTPREISSN  1620
NGVMDYQVYG GHDCTKVVVP FAMDMKRREM FSEMQRRNGF DAISNLQHQG RGMVGMNVVG  1680
TGVGGVVGGS CPNLSDPVAV LRMQYAKTEQ YGGQSGSIMR E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	771	862	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	771	862	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454301.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
Refseq	XP_012454302.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
TrEMBL	A0A0D2VR78	0.0	A0A0D2VR78_GOSRA; Uncharacterized protein
STRING	Gorai.011G240800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G240800.1
Entrez Gene	105776280

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]