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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.011G234200.1 |
| Common Name | B456_011G234200, LOC105776768 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 450aa MW: 49852 Da PI: 5.8074 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.011G234200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.5 | 1.3e-53 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
l+pGfrFhPtdeelv++yLk+k+++k++++ ++++evdiyk+ePwdL +k++++++ewyfFs dkky +g r nrat++gyWkatgkd
Gorai.011G234200.1 32 LAPGFRFHPTDEELVSYYLKRKISNKPVRF-NAMAEVDIYKHEPWDLSdkAKLQTRDQEWYFFSLLDKKYGNGGRMNRATNQGYWKATGKD 121
579************************999.89**************85348888999********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ev + +++l+g+kktLvf++grap+g +t+Wvmheyrl
Gorai.011G234200.1 122 REVRH-NTHLIGMKKTLVFHSGRAPDGMRTNWVMHEYRL 159
*****.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MGGETSLTLV PGPTSPPPSA AAAKTGGSAT ALAPGFRFHP TDEELVSYYL KRKISNKPVR 60
FNAMAEVDIY KHEPWDLSDK AKLQTRDQEW YFFSLLDKKY GNGGRMNRAT NQGYWKATGK 120
DREVRHNTHL IGMKKTLVFH SGRAPDGMRT NWVMHEYRLV EEELEKIGAL QGYVLCRVFH 180
KNNIGPPNGN RYAPFIEAEW DDGSIPLVLG VDTGDDGVAG NDAIAGSDVA TTENAAVENN 240
ADQMIGFEQE TEHAGKDALP NDEVPRETLN DKTDDCPPLP PCKVERPDDC PPICMLNREA 300
SLPLLRYKRR RHTDLGPNHA NASENSTRTT QDRCSSTTTT AAAATTTSPS SATTTAISAL 360
LEFSLMESLE LKENNHRVPP PTFDIANLDS VVPPSCMKLI NELQKEIRKI SVERETLKLE 420
MMSAQTMINI LHSRIDFLSK ENEELKRSN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC847246 | 1e-171 | KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds. |
| Publications
? help Back to Top |
- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
Plant J., 2011. 65(3): p. 492-502
[PMID:21265901] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
Cell Discov, 2019.
[PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
Plant J., 2017. 90(3): p. 505-519
[PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression.
Plant Cell, 1998. 10(10): p. 1747-58
[PMID:9761800]
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