PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G204700.4
Common NameB456_011G204700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 969aa    MW: 107755 Da    PI: 7.4864
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G204700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.72.6e-54201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+
  Gorai.011G204700.4  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ ++e+iv+vhy+evk
  Gorai.011G204700.4 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4821134IPR005559CG-1 DNA-binding domain
CDDcd001025.26E-4442530No hitNo description
Gene3DG3DSA:2.60.40.105.8E-6442530IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.04E-17443529IPR014756Immunoglobulin E-set
PfamPF018338.8E-5443528IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.7E-16620722IPR020683Ankyrin repeat-containing domain
CDDcd002046.90E-15622716No hitNo description
SuperFamilySSF484032.49E-16622720IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.457624728IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-6629719IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.114657689IPR002110Ankyrin repeat
SMARTSM002487.0E-4657686IPR002110Ankyrin repeat
SMARTSM00248220696725IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-9803881IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.6830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242831860IPR000048IQ motif, EF-hand binding site
PfamPF006120.034833851IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0077853875IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.194854878IPR000048IQ motif, EF-hand binding site
PfamPF006122.8E-4857874IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA  180
STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS  300
DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE  360
PKGIDKNNDE PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL  420
SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGAGTKVL LVGNFLKNKE LPSAAKWGCM  480
FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA  540
VKCTAQEEMH LQVCLAKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE  600
GLILNLLKQK LSQWLIQKVH EDGKGHGVIH LAASLGYEWA MNPIVAAGIS PNFRDAKGRT  660
ALHWASYFGR EETVIALIKL GASPGAVDDP TPNFPGGRTA ADLASSRGHK GIAGYLAEAN  720
LTTHLSSLTV NQNVVGNDAA TKPAQEAIET PSEVAPSNRT LDDNCSLKGS LAAVRKSAHA  780
AALIQAAFRT RSAHFRQLTK GNDDMSEISL ELGILGSLNR LQKTSHFGDY LHTAASKIQQ  840
KYRGWKGRKE FLKIRNRIVK IQAHVRGHQV RRQYTKLVWS VGLVEKIILR WRRKGAGLRG  900
FRVQTATNKT VAGIEIDDEY EFLQVGQQQK VDGIEKALAR VKSMARDQEA REQYMRLTTK  960
FGESKDSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4685504e-51AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455732.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
TrEMBLA0A0D2TB350.0A0A0D2TB35_GOSRA; Uncharacterized protein
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-151Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]