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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G204700.3 | ||||||||
Common Name | B456_011G204700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 974aa MW: 108306 Da PI: 7.3872 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.7 | 2.6e-54 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+ Gorai.011G204700.3 20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110 5559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrrcyw+L+ ++e+iv+vhy+evk Gorai.011G204700.3 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.816 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-74 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.1E-48 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.9E-6 | 439 | 527 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 5.29E-4 | 439 | 527 | No hit | No description |
Pfam | PF01833 | 8.9E-5 | 440 | 525 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.05E-17 | 440 | 526 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 4.04E-17 | 613 | 724 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.26E-16 | 618 | 721 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.1E-17 | 618 | 727 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.457 | 629 | 733 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.1E-6 | 634 | 724 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.0E-4 | 662 | 691 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.114 | 662 | 694 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 220 | 701 | 730 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.58E-9 | 808 | 886 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 5.6 | 835 | 857 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.242 | 836 | 865 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.034 | 838 | 856 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0077 | 858 | 880 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.194 | 859 | 883 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.8E-4 | 862 | 879 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF 60 DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML 120 DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA 180 STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAE SGRNPPGSWL 240 GESNFNHNTV YGSSFWPGSH HLATNNISML DHKLYVEQPT TSDFIIKEAQ VRLHDVSDAV 300 TCGDKLINDG DVQAVGEYPE KLIQELQGHD FNFIGLQSQN YSGPQKVVST SMQNEKEPKG 360 IDKNNDEPGE LKKLDSFGRW MDKEIGGDCD DSLMASDSAN YWSTLNTETD DKEVSSLSRH 420 MQLDIDSLGP SLSQEQLFSI VDFSPDWAYS GAGTKVLLVG NFLKNKELPS AAKWGCMFGE 480 IEVSAEVLTK NVIRCQVPSH VPGRVPFYIT CSNRLACSEV REFEYREKPP GFSFFTAVKC 540 TAQEEMHLQV CLAKLLHTGP GRKWLDCSVE ECDKCKLKSS ICSMGEASAN DCIQSKEGLI 600 LNLLKQKLSQ WLIQKVHEDG KGPLILDDKG HGVIHLAASL GYEWAMNPIV AAGISPNFRD 660 AKGRTALHWA SYFGREETVI ALIKLGASPG AVDDPTPNFP GGRTAADLAS SRGHKGIAGY 720 LAEANLTTHL SSLTVNQNVV GNDAATKPAQ EAIETPSEVA PSNRTLDDNC SLKGSLAAVR 780 KSAHAAALIQ AAFRTRSAHF RQLTKGNDDM SEISLELGIL GSLNRLQKTS HFGDYLHTAA 840 SKIQQKYRGW KGRKEFLKIR NRIVKIQAHV RGHQVRRQYT KLVWSVGLVE KIILRWRRKG 900 AGLRGFRVQT ATNKTVAGIE IDDEYEFLQV GQQQKVDGIE KALARVKSMA RDQEAREQYM 960 RLTTKFGESK DSD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468550 | 4e-51 | AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455732.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X2 | ||||
TrEMBL | A0A0D2UW74 | 0.0 | A0A0D2UW74_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G204700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-157 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G204700.3 |
Publications ? help Back to Top | |||
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