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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G204700.1 | ||||||||
Common Name | B456_011G204700, LOC105777170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 981aa MW: 109118 Da PI: 7.5894 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.6 | 2.7e-54 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+ Gorai.011G204700.1 20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110 5559*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrrcyw+L+ ++e+iv+vhy+evk Gorai.011G204700.1 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.816 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-74 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.2E-48 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 5.33E-4 | 442 | 530 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 5.9E-6 | 442 | 530 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.06E-17 | 443 | 529 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 9.0E-5 | 443 | 528 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 4.2E-17 | 616 | 727 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.2E-17 | 621 | 730 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.36E-16 | 621 | 724 | No hit | No description |
PROSITE profile | PS50297 | 18.457 | 632 | 736 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.3E-6 | 637 | 727 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 7.0E-4 | 665 | 694 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.114 | 665 | 697 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 220 | 704 | 733 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.58E-9 | 811 | 889 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 5.6 | 838 | 860 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.242 | 839 | 868 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.034 | 841 | 859 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0077 | 861 | 883 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.194 | 862 | 886 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.9E-4 | 865 | 882 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 981 aa Download sequence Send to blast |
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF 60 DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML 120 DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA 180 STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG 240 SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS 300 DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE 360 PKGIDKNNDE PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL 420 SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGAGTKVL LVGNFLKNKE LPSAAKWGCM 480 FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA 540 VKCTAQEEMH LQVCLAKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE 600 GLILNLLKQK LSQWLIQKVH EDGKGPLILD DKGHGVIHLA ASLGYEWAMN PIVAAGISPN 660 FRDAKGRTAL HWASYFGREE TVIALIKLGA SPGAVDDPTP NFPGGRTAAD LASSRGHKGI 720 AGYLAEANLT THLSSLTVNQ NVVGNDAATK PAQEAIETPS EVAPSNRTLD DNCSLKGSLA 780 AVRKSAHAAA LIQAAFRTRS AHFRQLTKGN DDMSEISLEL GILGSLNRLQ KTSHFGDYLH 840 TAASKIQQKY RGWKGRKEFL KIRNRIVKIQ AHVRGHQVRR QYTKLVWSVG LVEKIILRWR 900 RKGAGLRGFR VQTATNKTVA GIEIDDEYEF LQVGQQQKVD GIEKALARVK SMARDQEARE 960 QYMRLTTKFG ESKVNFQLLL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468550 | 4e-51 | AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455731.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 | ||||
TrEMBL | A0A0D2RQF7 | 0.0 | A0A0D2RQF7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G204700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16526 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-157 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G204700.1 |
Entrez Gene | 105777170 |
Publications ? help Back to Top | |||
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