PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 357aa MW: 39349.8 Da PI: 6.7245

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G201800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.9	5e-34	193	251	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+ Gorai.011G201800.1 193 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHKHP 251 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.8E-98	1	354	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	2.0E-35	178	253	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-30	185	253	IPR003657	WRKY domain
PROSITE profile	PS50811	33.189	188	253	IPR003657	WRKY domain
SMART	SM00774	2.8E-39	193	252	IPR003657	WRKY domain
Pfam	PF03106	9.7E-28	194	251	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEKKKENLIS MANLRFSDEN PSAVAAAAAA TSFGGSIFDM TTGAGACDGD TKWGSSLGFM 60 DLLGIHQDFI APSLFDSFQP PPILPPPPPS TSSEPLLHQQ LDTKQLQALP SPASIVPESS 120 EVLNNPATPN SSSFSSSSNE AANDHEPTKA EDDEEEEQDQ DKTKKQLKPK KKNQKRQREP 180 RFAFMTKSEV DHLDDGYRWR KYGQKAVKNS PFPRSYYRCT SAGCGVKKRV ERSSDDPSIV 240 VTTYEGQHKH PYPITPRGSI GINMDPSSSF GPSFVVPQPQ YLHQQQQLQP YIYNSSPSLN 300 ITSITRSGSS FNASIPDFLQ DRRFNTPPTS SASLLRDHGL LQDLVPTQMR KEAKEQ*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEKKKENLIS MANLRFSDEN PSAVAAAAAA TSFGGSIFDM TTGAGACDGD TKWGSSLGFM  60
DLLGIHQDFI APSLFDSFQP PPILPPPPPS TSSEPLLHQQ LDTKQLQALP SPASIVPESS  120
EVLNNPATPN SSSFSSSSNE AANDHEPTKA EDDEEEEQDQ DKTKKQLKPK KKNQKRQREP  180
RFAFMTKSEV DHLDDGYRWR KYGQKAVKNS PFPRSYYRCT SAGCGVKKRV ERSSDDPSIV  240
VTTYEGQHKH PYPITPRGSI GINMDPSSSF GPSFVVPQPQ YLHQQQQLQP YIYNSSPSLN  300
ITSITRSGSS FNASIPDFLQ DRRFNTPPTS SASLLRDHGL LQDLVPTQMR KEAKEQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	186	253	10	77	Probable WRKY transcription factor 4
2lex_A	4e-28	186	253	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN609590	0.0	JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBank	KF669855	0.0	KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454615.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	8e-64	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D2RQ93	0.0	A0A0D2RQ93_GOSRA; Uncharacterized protein
STRING	Gorai.011G201800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-53	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Gorai.011G201800.1
Entrez Gene	105776490

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]