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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G172500.1 | ||||||||
Common Name | B456_011G172500, LOC105777326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24225.4 Da PI: 7.0481 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.3e-09 | 62 | 109 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L + l + + + +K++iL A++ + +L Gorai.011G172500.1 62 TKACREKLRREKLNERFLDLSSTLEPG---RPARTDKSAILDDAIRVLTQL 109 6789**********************8...789*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-12 | 50 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.58E-6 | 56 | 114 | No hit | No description |
PROSITE profile | PS50888 | 12.843 | 58 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 62 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-10 | 64 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-8 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDLIEVWDFL DFSFIDENTS PDILLPNYSS GREIVVHQEK EFVDRDCSRK RGRSGSCSRP 60 GTKACREKLR REKLNERFLD LSSTLEPGRP ARTDKSAILD DAIRVLTQLR TDAQELKETN 120 EKLLEEIKSL KAEKNEIREE KLVLKANKER IEQQLKTLNV SAAGYLPAHP AGYHAAANKM 180 AVFPGYGLVP VWQYLPPSAR DTSQDHEHRP PAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455994.1 | 1e-157 | PREDICTED: transcription factor bHLH104-like isoform X1 | ||||
Swissprot | Q8L467 | 1e-81 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A0D2T9D9 | 1e-156 | A0A0D2T9D9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G172500.1 | 1e-157 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G172500.1 |
Entrez Gene | 105777326 |