PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G150200.1

Common Name

B456_011G150200, LOC105777960

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 518aa MW: 56260.9 Da PI: 7.8468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G150200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	337	384	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.011G150200.1 337 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 384 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.61E-10	331	388	No hit	No description
SuperFamily	SSF47459	6.67E-17	331	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.523	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-17	333	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	337	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-9	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MEKDQVFMGE GLNRAAAVQA GWNSCSFGME METDELNCVG SCFLNPKWHN SMDQSDPFES 60 ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSLI KPPNNNNNCS 120 SNTSCYTSPL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARFSC FNGLNPQVGV 180 TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQDGNSC SDKRNSRLSR CSSPENGDSK 240 DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAAEAKIAE ENNKSTAKRS 300 KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV 360 PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDMFRSRGSL 420 PHSHYPMDSS ALAFGLRYQP QQGLPMNNGI SNDTQIKFSM NPANAALHKT QRLQLPPVDG 480 ISDANPQIGS FWDDDLQSIV QMGFGQNQPQ SCQSKHS*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MEKDQVFMGE GLNRAAAVQA GWNSCSFGME METDELNCVG SCFLNPKWHN SMDQSDPFES  60
ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSLI KPPNNNNNCS  120
SNTSCYTSPL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARFSC FNGLNPQVGV  180
TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQDGNSC SDKRNSRLSR CSSPENGDSK  240
DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAAEAKIAE ENNKSTAKRS  300
KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV  360
PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDMFRSRGSL  420
PHSHYPMDSS ALAFGLRYQP QQGLPMNNGI SNDTQIKFSM NPANAALHKT QRLQLPPVDG  480
ISDANPQIGS FWDDDLQSIV QMGFGQNQPQ SCQSKHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456950.1	0.0	PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBL	A0A0D2UTJ3	0.0	A0A0D2UTJ3_GOSRA; Uncharacterized protein
STRING	Gorai.011G150200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G150200.1
Entrez Gene	105777960

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]