PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 334aa MW: 35633.5 Da PI: 8.2997

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G144600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	267	312	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq Gorai.011G144600.1 267 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 312 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.98	261	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-14	264	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-11	265	316	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	266	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	267	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYPSSSSQKP MGQSGLTRYG SAPGSFLANA VDSVIGADPN LVGHYFSAAD SSSLTSESTC 60 KVSSSNDPRE PKSAAAAAPA PPHPPPHHPH GSYPAPSSSS LLRQRSSPAG FLSHLTSENG 120 FSVTMGNRNY SSQGSGNGGH GVSRLKSQLS FTRQDSLSQI SEVSENLVDG VSSNSNHQNP 180 AHSFAAAGFG MDSWDNTNSI VFSAPSSKRA KNLDGDIYNC FNALETQFSL PQTTLEMATV 240 EKLLHIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM 300 LDLAVQHIKG LQNEVQKLHK ELESCTCGCK QSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456514.1	0.0	PREDICTED: transcription factor bHLH128
Refseq	XP_016677778.1	0.0	PREDICTED: transcription factor bHLH128-like
Refseq	XP_016699171.1	0.0	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	1e-98	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0D2UT46	0.0	A0A0D2UT46_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8K9J2	0.0	A0A1U8K9J2_GOSHI; transcription factor bHLH128-like
TrEMBL	A0A2P5XVF4	0.0	A0A2P5XVF4_GOSBA; Uncharacterized protein
STRING	Gorai.011G144600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-82	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G144600.1
Entrez Gene	105777689

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]