PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Gorai.011G142000.2

Common Name

B456_011G142000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 174aa MW: 20056.9 Da PI: 9.7793

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G142000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.6	4.7e-19	12	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k+ +HnH+l+ Gorai.011G142000.2 12 FYDDYARQVGFLTRVLSSHKSECDGLLFSRGLGCRGYRDGQTKVEL-----QKQDKQQESCSAMIHLRRDKSGRWVIKKFARDHNHPLV 95 9*******************************876666665555.....78888999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-16	12	95	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MIFESEGAAK TFYDDYARQV GFLTRVLSSH KSECDGLLFS RGLGCRGYRD GQTKVELQKQ 60 DKQQESCSAM IHLRRDKSGR WVIKKFARDH NHPLVIQLGE SRRTLDEEKD KKIQELTAEL 120 RVKKRLSASY REQLLAVVKE VEDHNYNLSM KVQRTLDNLK KLDAEAKEIL SGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455911.1	1e-125	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2USY3	1e-123	A0A0D2USY3_GOSRA; Uncharacterized protein (Fragment)
TrEMBL	A0A0D2VM38	1e-123	A0A0D2VM38_GOSRA; Uncharacterized protein
STRING	Gorai.011G142000.1	1e-123	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-52	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G142000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]