PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G110900.1
Common NameB456_011G110900, LOC105775829
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 271aa    MW: 29929.6 Da    PI: 7.6405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G110900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-1274125155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++ + +  L++++P++   + ++ + a+i   A++++k+L+
  Gorai.011G110900.1  74 QRMTHIAVERNRRKQMSDYLGLLKSMMPTS---YVQRGDQASIIGGAINFVKELE 125
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.93E-1072129No hitNo description
PROSITE profilePS5088813.86573124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-1473137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1174136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-779130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALDTVVFQQ DPFTYGGLND SFTLKQQHET SAQSRGFAFS ATCSASPANG FAPPCRRKRG  60
RNNNVKNREE IEHQRMTHIA VERNRRKQMS DYLGLLKSMM PTSYVQRGDQ ASIIGGAINF  120
VKELEQFLQS LEARKTTEKN PENSSSVSST FSGFFNFPQY SSTTHRSCAA SAGESVASSS  180
SVANVEVTVV ESHANLKILT GKHPKQLLKM VNGIQSLGLL VLHLNLTSHE DLVLYSFSVK  240
IEENCELRRV NEIAAAVYEM VDGFQEESAH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17485RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453795.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2RKK00.0A0A0D2RKK0_GOSRA; Uncharacterized protein
STRINGGorai.011G110900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3686422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]