PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G105700.1
Common NameB456_011G105700, LOC105778021
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 285aa    MW: 31357.2 Da    PI: 6.7745
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G105700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.21.2e-37101022103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+e+g+sfvv+++ +f+k++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+g+k+
  Gorai.011G105700.1  10 FLTKTYQLVDDPNTDNVISWNESGTSFVVWKTADFSKDLLPTYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANDNFKRGEKQ 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll+ki r+k++
  Gorai.011G105700.1  92 LLSKISRRKTA 102
                         ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-39393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PNTDNVISWN ESGTSFVVWK TADFSKDLLP TYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANDNFKRGEK QLLSKISRRK TATSPPADAP AKGKTSGAAT  120
PSPTDSGEDL GSTSTSSPES KNPGSVETNQ FTDLSEENQK LKRDNEMLSI ELAQAKRKCD  180
ELVAFLTECV KVGPDQINRI MPQGSCGSTI NGEGPGRICG VDDDEKTSEE DMGGLKLFGV  240
WLKGVEKKRA REESIMYGGP HAKEMKTVDF RHVPLVMESG KVCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-28510416125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674160.0KR067416.1 Gossypium hirsutum HSF35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457023.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-108HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D2T5Y70.0A0A0D2T5Y7_GOSRA; Uncharacterized protein
STRINGGorai.011G105700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-93heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]