PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G087700.2

Common Name

B456_011G087700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 187aa MW: 21230 Da PI: 9.8421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G087700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.7	9.6e-19	3	75	56	128
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ yfFs+r+ +y + ++ +ra+ sgyWk gk+k++l++ ++++vg+++ L+f + + ++g++t+W++h+yrl Gorai.011G087700.2 3 ESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKPILASgTNRVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 75 456********86.6889999***********9967788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.736	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-19	4	104	IPR003441	NAC domain
Pfam	PF02365	1.7E-8	5	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKESKYFFST RHDSYINNKC KRAAGSGYWK PIGKEKPILA SGTNRVVGMR RALIFCQRKC 60 SNGTQTRWLL HQYRLVDPVP TLDSTQRSRS EMCGPDWLVF RVFQRKRSRR GKKHEVVSHK 120 SETSSAMNMP SCIDFTVEES SVFGPPPQPT SPSSTEITEV SSHGLDQEES SAFITSYYSN 180 CCMRNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	6	108	74	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	6	108	74	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	6	108	74	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	6	108	74	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	6	108	77	171	NAC domain-containing protein 19
3swm_B	1e-15	6	108	77	171	NAC domain-containing protein 19
3swm_C	1e-15	6	108	77	171	NAC domain-containing protein 19
3swm_D	1e-15	6	108	77	171	NAC domain-containing protein 19
3swp_A	1e-15	6	108	77	171	NAC domain-containing protein 19
3swp_B	1e-15	6	108	77	171	NAC domain-containing protein 19
3swp_C	1e-15	6	108	77	171	NAC domain-containing protein 19
3swp_D	1e-15	6	108	77	171	NAC domain-containing protein 19
4dul_A	1e-15	6	108	74	168	NAC domain-containing protein 19
4dul_B	1e-15	6	108	74	168	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	QRKRSRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457098.1	1e-137	PREDICTED: NAC domain-containing protein 18-like
TrEMBL	A0A0D2T4N1	1e-137	A0A0D2T4N1_GOSRA; Uncharacterized protein
STRING	Gorai.011G087700.1	1e-137	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	1e-20	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Gorai.011G087700.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]