PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G087700.1 | ||||||||
Common Name | B456_011G087700, LOC105778062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28244.2 Da PI: 9.0865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.3 | 8.8e-38 | 14 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d+++++Pw++p + +++ yfFs+r+ +y + ++ +ra+ sgyWk gk+k+ Gorai.011G087700.1 14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKP 99 699***************************.99***************554...4577**********86.6889999************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++++vg+++ L+f + + ++g++t+W++h+yrl Gorai.011G087700.1 100 ILASgTNRVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 137 **9967788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-40 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.128 | 14 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-21 | 15 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP 60 GDMKESKYFF STRHDSYINN KCKRAAGSGY WKPIGKEKPI LASGTNRVVG MRRALIFCQR 120 KCSNGTQTRW LLHQYRLVDP VPTLDSTQRS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS 180 HKSETSSAMN MPSCIDFTVE ESSVFGPPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY 240 SNCCMRNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-33 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-33 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-33 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-33 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-33 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-33 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | QRKRSRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX589385 | 2e-71 | JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457098.1 | 0.0 | PREDICTED: NAC domain-containing protein 18-like | ||||
TrEMBL | A0A0D2UPU7 | 0.0 | A0A0D2UPU7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G087700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-52 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G087700.1 |
Entrez Gene | 105778062 |
Publications ? help Back to Top | |||
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