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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G073400.2 | ||||||||
Common Name | B456_011G073400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 30139.2 Da PI: 7.0989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00032 | 208 | 246 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.011G073400.2 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.534 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-10 | 206 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.08E-6 | 206 | 250 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-7 | 210 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MMAGNPSWWS MHLHPPSQHP STLLTTPSPS LFPQYVVEYS ATSLPDNQEL PQSCSQLLSG 60 GFSGEEERLC PSNFQPKKLE NWENQILNPS LRVPVVEVIK QEVTQQHSNL YGHHHASEEF 120 QAPRLPVPPA AWSQIMGTAV LSPSPRSCIT TSSSNMLDFT YNKATDGSIS NTQPPVDHSS 180 ECNSKGSGGV FKKARVQTSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG 240 YIRFLQSQIE VMFLQHLPIH LYTLCMPYTP AY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136055 | 1e-32 | BT136055.1 Medicago truncatula clone JCVI-FLMt-17F9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457034.1 | 0.0 | PREDICTED: transcription factor bHLH68-like | ||||
Refseq | XP_016698055.1 | 0.0 | PREDICTED: transcription factor bHLH68-like | ||||
Swissprot | Q8S3D1 | 1e-31 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A0D2RIB5 | 0.0 | A0A0D2RIB5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G073400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 3e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G073400.2 |
Publications ? help Back to Top | |||
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