PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G064700.3

Common Name

B456_011G064700, LOC105777231

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 418aa MW: 45433.9 Da PI: 9.3165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G064700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.011G064700.3 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.1	0.0003	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Gorai.011G064700.3 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.8E-7	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	6	28	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.4E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.1E-5	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.8E-7	77	102	No hit	No description
SMART	SM00355	140	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKKVYVCP EVSCVHHDPS 60 RALGDLTGIK KHFYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR 120 DSFITHRAFC DALAEESSRA AIMGANTFQP GSSHTNLQVP QFNPHDIQAF SLKQEQHQRF 180 TPLKPDIPPW LATQPMLGAG AGLSSSSSSI FSPSLTLHEN PTPIPTLDPT LPPYHPTTVL 240 SPHMSATALL QKAAQMGATL SNKPGSSSAP ATSTAMRPHQ QTHVSADFVG STNNNSTTAG 300 FGLNLSSREE VSMGSGFIHG STHHASESSG APPPPSLFLQ GMMNSLSSPI GFDSTSFDDI 360 AFSGILNAKK KSGTLINESF SKTTAEPENG TGNNNDHESR AGGSTQGEAL RRDFLAL*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKKVYVCP EVSCVHHDPS  60
RALGDLTGIK KHFYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR  120
DSFITHRAFC DALAEESSRA AIMGANTFQP GSSHTNLQVP QFNPHDIQAF SLKQEQHQRF  180
TPLKPDIPPW LATQPMLGAG AGLSSSSSSI FSPSLTLHEN PTPIPTLDPT LPPYHPTTVL  240
SPHMSATALL QKAAQMGATL SNKPGSSSAP ATSTAMRPHQ QTHVSADFVG STNNNSTTAG  300
FGLNLSSREE VSMGSGFIHG STHHASESSG APPPPSLFLQ GMMNSLSSPI GFDSTSFDDI  360
AFSGILNAKK KSGTLINESF SKTTAEPENG TGNNNDHESR AGGSTQGEAL RRDFLAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	78	146	3	71	Zinc finger protein JACKDAW
5b3h_F	5e-35	78	146	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	44	KLKQRTSKEVRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269\|PubMed:25035403}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455825.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q9SCQ6	1e-101	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0D2T3E8	0.0	A0A0D2T3E8_GOSRA; Uncharacterized protein
STRING	Gorai.011G064700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-97	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Gorai.011G064700.3
Entrez Gene	105777231

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]