PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G064700.2
Common NameB456_011G064700, LOC105777231
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 412aa    MW: 45044.6 Da    PI: 9.5386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G064700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0585107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.011G064700.2  85 FVCEICNKGFQRDQNLQLHRRGH 107
                         89*******************88 PP
2zf-C2H213.10.00029161183123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Gorai.011G064700.2 161 WKCDKCSKRYAVQSDWKAHSKTC 183
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-784107No hitNo description
Gene3DG3DSA:3.30.160.601.3E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PfamPF121716.3E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035589126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-5149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.9E-7156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MMKGYIVQQQ QQQVLEENMS NLTCASGEAS VSSAAGGTNY SQQYFSNPPA QAQPVKRKRN  60
QPGNPDPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE VSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTKEYRC DCGTLFSRRD SFITHRAFCD ALAEESSRAA IMGANTFQPG SSHTNLQVPQ  240
FNPHDIQAFS LKQEQHQRFT PLKPDIPPWL ATQPMLGAGA GLSSSSSSIF SPSLTLHENP  300
TPIPTLDPTL PPYHPTTVLS PHMSATALLQ KAAQMGATLS NKPGSSSAPA TSTAMRPHQQ  360
THVSADFVGS TNNNSTTAGF GLNLSSREEV SMGSGFIHGS THHASESSVG F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35157225371Zinc finger protein JACKDAW
5b3h_F4e-35157225371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455826.10.0PREDICTED: protein indeterminate-domain 7-like isoform X2
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2RHW20.0A0A0D2RHW2_GOSRA; Uncharacterized protein
STRINGGorai.011G064700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-117indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]