PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G058800.1
Common NameB456_011G058800, LOC105776896
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 322aa    MW: 35521.4 Da    PI: 8.9018
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G058800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.23.8e-2574118145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Gorai.011G058800.1  74 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 118
                         79****************************************986 PP
2QLQ57.73.6e-20941234
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                         FT++Q+q+L++Q+l++Ky+++++P+Pp+Ll  
  Gorai.011G058800.1  9 LFTPNQWQELEHQALIFKYMVSGVPIPPQLLYS 41
                        6*****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-10844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.858944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-151042IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.47974118IPR014977WRC domain
PfamPF088792.8E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MISARNKYLF TPNQWQELEH QALIFKYMVS GVPIPPQLLY SVKTSFDSSL ASHLFPHQPT  60
GWGCFQVGFG RKPDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN RSRKPVEANS  120
SSSSSSSSSS TAPPAPPTTA AASILSPSFP SINSNLPTSS SSLSFSPMAT ENFTHFDPFL  180
YSHSSTRLHG SGLSVPSHHF LDSGTGIDYP QTDKIYRYVH GTREVVDERS FFPEASGSVR  240
VVPDSYQSLT MVQSFGDNNG SKQGQQCFVL GTDIKSAKPI KLEKDEGTQK PVHQFLGDWT  300
QGNNNGSWLD LASNSRVQSD S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455302.10.0PREDICTED: growth-regulating factor 5 isoform X1
TrEMBLA0A0D2UPM30.0A0A0D2UPM3_GOSRA; Uncharacterized protein
STRINGGorai.011G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-64growth-regulating factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]